Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3656 and HP15_3657 are separated by 9 nucleotides HP15_3657 and HP15_3658 are separated by 99 nucleotides
HP15_3656: HP15_3656 - inner-membrane translocator, at 3,850,543 to 3,851,751
_3656
HP15_3657: HP15_3657 - urea ABC transporter, permease protein UrtB, at 3,851,761 to 3,852,687
_3657
HP15_3658: HP15_3658 - urea ABC transporter, urea binding protein, at 3,852,787 to 3,854,058
_3658
Position (kb)
3851
3852
3853 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3850.822 kb on + strand, within HP15_3656 at 3850.952 kb on + strand, within HP15_3656 at 3850.960 kb on - strand, within HP15_3656 at 3851.013 kb on + strand, within HP15_3656 at 3851.022 kb on - strand, within HP15_3656 at 3851.083 kb on + strand, within HP15_3656 at 3851.113 kb on + strand, within HP15_3656 at 3851.127 kb on - strand, within HP15_3656 at 3851.140 kb on + strand, within HP15_3656 at 3851.140 kb on + strand, within HP15_3656 at 3851.146 kb on - strand, within HP15_3656 at 3851.163 kb on - strand, within HP15_3656 at 3851.172 kb on + strand, within HP15_3656 at 3851.180 kb on - strand, within HP15_3656 at 3851.208 kb on + strand, within HP15_3656 at 3851.227 kb on + strand, within HP15_3656 at 3851.227 kb on + strand, within HP15_3656 at 3851.259 kb on - strand, within HP15_3656 at 3851.259 kb on - strand, within HP15_3656 at 3851.264 kb on + strand, within HP15_3656 at 3851.297 kb on + strand, within HP15_3656 at 3851.297 kb on + strand, within HP15_3656 at 3851.305 kb on - strand, within HP15_3656 at 3851.359 kb on + strand, within HP15_3656 at 3851.373 kb on + strand, within HP15_3656 at 3851.397 kb on - strand, within HP15_3656 at 3851.413 kb on - strand, within HP15_3656 at 3851.461 kb on + strand, within HP15_3656 at 3851.532 kb on + strand, within HP15_3656 at 3851.539 kb on + strand, within HP15_3656 at 3851.546 kb on + strand, within HP15_3656 at 3851.609 kb on - strand, within HP15_3656 at 3851.696 kb on + strand at 3851.696 kb on + strand at 3851.704 kb on - strand at 3851.704 kb on - strand at 3851.704 kb on - strand at 3851.746 kb on - strand at 3851.830 kb on + strand at 3851.830 kb on + strand at 3851.830 kb on + strand at 3851.830 kb on + strand at 3851.842 kb on + strand at 3851.894 kb on - strand, within HP15_3657 at 3851.915 kb on - strand, within HP15_3657 at 3851.933 kb on + strand, within HP15_3657 at 3851.941 kb on - strand, within HP15_3657 at 3851.941 kb on - strand, within HP15_3657 at 3851.974 kb on - strand, within HP15_3657 at 3851.974 kb on - strand, within HP15_3657 at 3851.984 kb on - strand, within HP15_3657 at 3852.082 kb on - strand, within HP15_3657 at 3852.087 kb on - strand, within HP15_3657 at 3852.176 kb on + strand, within HP15_3657 at 3852.176 kb on + strand, within HP15_3657 at 3852.176 kb on + strand, within HP15_3657 at 3852.184 kb on - strand, within HP15_3657 at 3852.184 kb on - strand, within HP15_3657 at 3852.184 kb on - strand, within HP15_3657 at 3852.184 kb on - strand, within HP15_3657 at 3852.270 kb on + strand, within HP15_3657 at 3852.270 kb on + strand, within HP15_3657 at 3852.278 kb on - strand, within HP15_3657 at 3852.333 kb on + strand, within HP15_3657 at 3852.341 kb on - strand, within HP15_3657 at 3852.406 kb on + strand, within HP15_3657 at 3852.406 kb on + strand, within HP15_3657 at 3852.406 kb on + strand, within HP15_3657 at 3852.414 kb on - strand, within HP15_3657 at 3852.416 kb on + strand, within HP15_3657 at 3852.430 kb on + strand, within HP15_3657 at 3852.438 kb on - strand, within HP15_3657 at 3852.439 kb on - strand, within HP15_3657 at 3852.526 kb on - strand, within HP15_3657 at 3852.588 kb on - strand, within HP15_3657 at 3852.733 kb on - strand at 3852.779 kb on + strand at 3852.798 kb on - strand at 3852.815 kb on + strand at 3852.845 kb on + strand at 3852.845 kb on + strand at 3852.845 kb on + strand at 3852.845 kb on + strand at 3852.853 kb on - strand at 3852.853 kb on - strand at 3852.853 kb on - strand at 3852.857 kb on + strand at 3852.863 kb on + strand at 3852.928 kb on - strand, within HP15_3658 at 3852.935 kb on - strand, within HP15_3658 at 3852.961 kb on + strand, within HP15_3658 at 3852.971 kb on - strand, within HP15_3658 at 3853.020 kb on + strand, within HP15_3658 at 3853.020 kb on + strand, within HP15_3658 at 3853.026 kb on + strand, within HP15_3658 at 3853.030 kb on + strand, within HP15_3658 at 3853.072 kb on + strand, within HP15_3658 at 3853.109 kb on + strand, within HP15_3658 at 3853.253 kb on + strand, within HP15_3658 at 3853.311 kb on + strand, within HP15_3658 at 3853.319 kb on - strand, within HP15_3658 at 3853.324 kb on - strand, within HP15_3658 at 3853.354 kb on - strand, within HP15_3658 at 3853.356 kb on - strand, within HP15_3658 at 3853.358 kb on + strand, within HP15_3658 at 3853.400 kb on - strand, within HP15_3658 at 3853.453 kb on + strand, within HP15_3658 at 3853.453 kb on + strand, within HP15_3658 at 3853.490 kb on + strand, within HP15_3658 at 3853.490 kb on + strand, within HP15_3658 at 3853.550 kb on + strand, within HP15_3658 at 3853.572 kb on + strand, within HP15_3658 at 3853.572 kb on + strand, within HP15_3658 at 3853.580 kb on - strand, within HP15_3658 at 3853.580 kb on - strand, within HP15_3658
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 3,850,822 + HP15_3656 0.23 -0.1 3,850,952 + HP15_3656 0.34 -0.3 3,850,960 - HP15_3656 0.34 -1.4 3,851,013 + HP15_3656 0.39 +0.7 3,851,022 - HP15_3656 0.40 +0.6 3,851,083 + HP15_3656 0.45 +0.1 3,851,113 + HP15_3656 0.47 -0.6 3,851,127 - HP15_3656 0.48 +0.0 3,851,140 + HP15_3656 0.49 +0.1 3,851,140 + HP15_3656 0.49 -0.5 3,851,146 - HP15_3656 0.50 +0.2 3,851,163 - HP15_3656 0.51 +3.0 3,851,172 + HP15_3656 0.52 +0.6 3,851,180 - HP15_3656 0.53 -0.1 3,851,208 + HP15_3656 0.55 +0.3 3,851,227 + HP15_3656 0.57 -0.4 3,851,227 + HP15_3656 0.57 +0.1 3,851,259 - HP15_3656 0.59 -0.6 3,851,259 - HP15_3656 0.59 +0.7 3,851,264 + HP15_3656 0.60 -0.1 3,851,297 + HP15_3656 0.62 +0.9 3,851,297 + HP15_3656 0.62 +0.3 3,851,305 - HP15_3656 0.63 -0.4 3,851,359 + HP15_3656 0.67 -0.4 3,851,373 + HP15_3656 0.69 -0.1 3,851,397 - HP15_3656 0.71 +0.8 3,851,413 - HP15_3656 0.72 -0.4 3,851,461 + HP15_3656 0.76 +1.5 3,851,532 + HP15_3656 0.82 +0.9 3,851,539 + HP15_3656 0.82 +0.1 3,851,546 + HP15_3656 0.83 +0.1 3,851,609 - HP15_3656 0.88 -0.3 3,851,696 + +0.6 3,851,696 + -0.3 3,851,704 - +0.3 3,851,704 - -0.5 3,851,704 - -0.4 3,851,746 - +0.9 3,851,830 + -0.2 3,851,830 + -0.1 3,851,830 + -0.4 3,851,830 + +0.3 3,851,842 + +0.0 3,851,894 - HP15_3657 0.14 -0.1 3,851,915 - HP15_3657 0.17 -0.3 3,851,933 + HP15_3657 0.19 -0.3 3,851,941 - HP15_3657 0.19 +0.5 3,851,941 - HP15_3657 0.19 +1.1 3,851,974 - HP15_3657 0.23 +0.4 3,851,974 - HP15_3657 0.23 -0.9 3,851,984 - HP15_3657 0.24 -0.1 3,852,082 - HP15_3657 0.35 -0.3 3,852,087 - HP15_3657 0.35 -1.0 3,852,176 + HP15_3657 0.45 +0.2 3,852,176 + HP15_3657 0.45 -1.3 3,852,176 + HP15_3657 0.45 -0.5 3,852,184 - HP15_3657 0.46 +1.3 3,852,184 - HP15_3657 0.46 +0.3 3,852,184 - HP15_3657 0.46 -0.7 3,852,184 - HP15_3657 0.46 -0.3 3,852,270 + HP15_3657 0.55 -0.1 3,852,270 + HP15_3657 0.55 -0.6 3,852,278 - HP15_3657 0.56 -0.6 3,852,333 + HP15_3657 0.62 +0.4 3,852,341 - HP15_3657 0.63 -0.2 3,852,406 + HP15_3657 0.70 -0.2 3,852,406 + HP15_3657 0.70 +1.0 3,852,406 + HP15_3657 0.70 -1.1 3,852,414 - HP15_3657 0.70 -0.4 3,852,416 + HP15_3657 0.71 -1.2 3,852,430 + HP15_3657 0.72 -0.7 3,852,438 - HP15_3657 0.73 +0.3 3,852,439 - HP15_3657 0.73 +1.3 3,852,526 - HP15_3657 0.83 +0.7 3,852,588 - HP15_3657 0.89 -0.1 3,852,733 - +0.3 3,852,779 + +0.3 3,852,798 - +1.0 3,852,815 + -0.6 3,852,845 + -0.0 3,852,845 + -0.1 3,852,845 + -0.6 3,852,845 + +0.3 3,852,853 - +1.5 3,852,853 - +0.3 3,852,853 - +0.3 3,852,857 + +0.2 3,852,863 + +0.1 3,852,928 - HP15_3658 0.11 +0.6 3,852,935 - HP15_3658 0.12 -0.9 3,852,961 + HP15_3658 0.14 +0.2 3,852,971 - HP15_3658 0.14 -0.3 3,853,020 + HP15_3658 0.18 +0.1 3,853,020 + HP15_3658 0.18 +0.9 3,853,026 + HP15_3658 0.19 +0.2 3,853,030 + HP15_3658 0.19 +1.2 3,853,072 + HP15_3658 0.22 +0.4 3,853,109 + HP15_3658 0.25 -0.8 3,853,253 + HP15_3658 0.37 +0.1 3,853,311 + HP15_3658 0.41 -0.2 3,853,319 - HP15_3658 0.42 -1.1 3,853,324 - HP15_3658 0.42 +0.8 3,853,354 - HP15_3658 0.45 +0.8 3,853,356 - HP15_3658 0.45 -0.3 3,853,358 + HP15_3658 0.45 -0.2 3,853,400 - HP15_3658 0.48 +0.4 3,853,453 + HP15_3658 0.52 +0.0 3,853,453 + HP15_3658 0.52 -0.3 3,853,490 + HP15_3658 0.55 +1.2 3,853,490 + HP15_3658 0.55 -0.3 3,853,550 + HP15_3658 0.60 +0.4 3,853,572 + HP15_3658 0.62 -0.5 3,853,572 + HP15_3658 0.62 -0.1 3,853,580 - HP15_3658 0.62 +1.0 3,853,580 - HP15_3658 0.62 +0.2
Or see this region's nucleotide sequence