Experiment: m.b. Phosphomycin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00980 and PGA1_262p00990 are separated by 269 nucleotides PGA1_262p00990 and PGA1_262p01000 are separated by 50 nucleotides
PGA1_262p00980: PGA1_262p00980 - transcriptional regulator, LysR family, at 107,499 to 108,389
_262p00980
PGA1_262p00990: PGA1_262p00990 - transcriptional regulator, LysR family, at 108,659 to 109,582
_262p00990
PGA1_262p01000: PGA1_262p01000 - dipeptide transport ATP-binding protein DppF, at 109,633 to 110,667
_262p01000
Position (kb)
108
109
110 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 107.659 kb on + strand, within PGA1_262p00980 at 107.667 kb on - strand, within PGA1_262p00980 at 107.675 kb on + strand, within PGA1_262p00980 at 107.702 kb on + strand, within PGA1_262p00980 at 107.728 kb on + strand, within PGA1_262p00980 at 107.814 kb on + strand, within PGA1_262p00980 at 107.814 kb on + strand, within PGA1_262p00980 at 107.818 kb on - strand, within PGA1_262p00980 at 107.818 kb on - strand, within PGA1_262p00980 at 107.823 kb on - strand, within PGA1_262p00980 at 107.827 kb on + strand, within PGA1_262p00980 at 107.942 kb on - strand, within PGA1_262p00980 at 107.942 kb on - strand, within PGA1_262p00980 at 108.004 kb on - strand, within PGA1_262p00980 at 108.091 kb on - strand, within PGA1_262p00980 at 108.137 kb on + strand, within PGA1_262p00980 at 108.179 kb on - strand, within PGA1_262p00980 at 108.221 kb on + strand, within PGA1_262p00980 at 108.251 kb on + strand, within PGA1_262p00980 at 108.251 kb on + strand, within PGA1_262p00980 at 108.259 kb on - strand, within PGA1_262p00980 at 108.259 kb on - strand, within PGA1_262p00980 at 108.320 kb on + strand at 108.328 kb on - strand at 108.383 kb on + strand at 108.389 kb on + strand at 108.406 kb on - strand at 108.421 kb on + strand at 108.432 kb on - strand at 108.445 kb on - strand at 108.445 kb on - strand at 108.450 kb on + strand at 108.450 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.456 kb on + strand at 108.461 kb on + strand at 108.464 kb on - strand at 108.464 kb on - strand at 108.464 kb on - strand at 108.464 kb on - strand at 108.464 kb on - strand at 108.464 kb on - strand at 108.464 kb on - strand at 108.470 kb on + strand at 108.491 kb on + strand at 108.542 kb on + strand at 108.542 kb on + strand at 108.550 kb on - strand at 108.559 kb on + strand at 108.568 kb on + strand at 108.578 kb on + strand at 108.586 kb on - strand at 108.605 kb on + strand at 108.638 kb on - strand at 108.650 kb on - strand at 108.712 kb on - strand at 108.722 kb on - strand at 108.803 kb on + strand, within PGA1_262p00990 at 108.826 kb on - strand, within PGA1_262p00990 at 108.971 kb on + strand, within PGA1_262p00990 at 109.078 kb on + strand, within PGA1_262p00990 at 109.086 kb on - strand, within PGA1_262p00990 at 109.086 kb on - strand, within PGA1_262p00990 at 109.086 kb on - strand, within PGA1_262p00990 at 109.086 kb on - strand, within PGA1_262p00990 at 109.176 kb on - strand, within PGA1_262p00990 at 109.340 kb on + strand, within PGA1_262p00990 at 109.444 kb on + strand, within PGA1_262p00990 at 109.599 kb on - strand at 109.604 kb on - strand at 109.615 kb on + strand at 109.622 kb on - strand at 109.637 kb on - strand at 109.637 kb on - strand at 109.639 kb on - strand at 109.639 kb on - strand at 109.639 kb on - strand at 109.763 kb on + strand, within PGA1_262p01000 at 109.857 kb on - strand, within PGA1_262p01000 at 109.892 kb on + strand, within PGA1_262p01000 at 110.064 kb on - strand, within PGA1_262p01000 at 110.268 kb on + strand, within PGA1_262p01000 at 110.298 kb on + strand, within PGA1_262p01000 at 110.309 kb on + strand, within PGA1_262p01000 at 110.309 kb on + strand, within PGA1_262p01000
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml remove 107,659 + PGA1_262p00980 0.18 +1.4 107,667 - PGA1_262p00980 0.19 -0.4 107,675 + PGA1_262p00980 0.20 +0.6 107,702 + PGA1_262p00980 0.23 +0.4 107,728 + PGA1_262p00980 0.26 +0.2 107,814 + PGA1_262p00980 0.35 -0.9 107,814 + PGA1_262p00980 0.35 -0.8 107,818 - PGA1_262p00980 0.36 -0.4 107,818 - PGA1_262p00980 0.36 -0.4 107,823 - PGA1_262p00980 0.36 -0.6 107,827 + PGA1_262p00980 0.37 +0.1 107,942 - PGA1_262p00980 0.50 -1.1 107,942 - PGA1_262p00980 0.50 +2.5 108,004 - PGA1_262p00980 0.57 -1.0 108,091 - PGA1_262p00980 0.66 -0.6 108,137 + PGA1_262p00980 0.72 -0.0 108,179 - PGA1_262p00980 0.76 +0.1 108,221 + PGA1_262p00980 0.81 -0.6 108,251 + PGA1_262p00980 0.84 +0.4 108,251 + PGA1_262p00980 0.84 -1.2 108,259 - PGA1_262p00980 0.85 +2.0 108,259 - PGA1_262p00980 0.85 +0.9 108,320 + -0.6 108,328 - -0.4 108,383 + +0.8 108,389 + -1.6 108,406 - -0.2 108,421 + +0.5 108,432 - -0.8 108,445 - +0.4 108,445 - +0.8 108,450 + -0.5 108,450 + -0.3 108,456 + +0.0 108,456 + +1.1 108,456 + +1.4 108,456 + +0.8 108,456 + +1.1 108,456 + +0.4 108,456 + -0.4 108,456 + +0.3 108,456 + +1.2 108,456 + -0.0 108,456 + -2.0 108,456 + -0.6 108,456 + +1.4 108,456 + -0.4 108,456 + +0.1 108,456 + +0.1 108,456 + -0.6 108,456 + +1.0 108,461 + -0.5 108,464 - -0.2 108,464 - -0.3 108,464 - +0.1 108,464 - +0.1 108,464 - -1.2 108,464 - -0.5 108,464 - -0.0 108,470 + -0.6 108,491 + +0.4 108,542 + +2.0 108,542 + -0.1 108,550 - -0.8 108,559 + -0.4 108,568 + +1.1 108,578 + -2.0 108,586 - +0.9 108,605 + +0.3 108,638 - -0.6 108,650 - +1.0 108,712 - +1.0 108,722 - +1.4 108,803 + PGA1_262p00990 0.16 -2.2 108,826 - PGA1_262p00990 0.18 -0.5 108,971 + PGA1_262p00990 0.34 +1.2 109,078 + PGA1_262p00990 0.45 -0.6 109,086 - PGA1_262p00990 0.46 +1.2 109,086 - PGA1_262p00990 0.46 +1.0 109,086 - PGA1_262p00990 0.46 +0.9 109,086 - PGA1_262p00990 0.46 -0.9 109,176 - PGA1_262p00990 0.56 -1.2 109,340 + PGA1_262p00990 0.74 +2.2 109,444 + PGA1_262p00990 0.85 +1.1 109,599 - -0.2 109,604 - +0.1 109,615 + +2.4 109,622 - +1.9 109,637 - +1.4 109,637 - -0.2 109,639 - +1.5 109,639 - +0.7 109,639 - -0.1 109,763 + PGA1_262p01000 0.13 -0.2 109,857 - PGA1_262p01000 0.22 +0.8 109,892 + PGA1_262p01000 0.25 -0.9 110,064 - PGA1_262p01000 0.42 +1.5 110,268 + PGA1_262p01000 0.61 -0.6 110,298 + PGA1_262p01000 0.64 +0.7 110,309 + PGA1_262p01000 0.65 +0.0 110,309 + PGA1_262p01000 0.65 +2.0
Or see this region's nucleotide sequence