Experiment: m.b. Phosphomycin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00550 and PGA1_262p00560 overlap by 1 nucleotides PGA1_262p00560 and PGA1_262p00570 are separated by 27 nucleotides PGA1_262p00570 and PGA1_262p00580 are separated by 26 nucleotides
PGA1_262p00550: PGA1_262p00550 - putative DNA modification/repair radical SAM protein, at 63,777 to 65,033
_262p00550
PGA1_262p00560: PGA1_262p00560 - uracil DNA glycosylase-like protein, at 65,033 to 66,478
_262p00560
PGA1_262p00570: PGA1_262p00570 - hypothetical protein, at 66,506 to 66,763
_262p00570
PGA1_262p00580: PGA1_262p00580 - putative polysaccharide biosynthesis/export protein, at 66,790 to 68,163
_262p00580
Position (kb) 65
66
67 Strain fitness (log2 ratio) -1
0
1
2
3 at 64.240 kb on - strand, within PGA1_262p00550 at 64.342 kb on - strand, within PGA1_262p00550 at 64.376 kb on + strand, within PGA1_262p00550 at 64.475 kb on + strand, within PGA1_262p00550 at 64.592 kb on - strand, within PGA1_262p00550 at 64.654 kb on - strand, within PGA1_262p00550 at 64.793 kb on - strand, within PGA1_262p00550 at 64.793 kb on - strand, within PGA1_262p00550 at 64.856 kb on + strand, within PGA1_262p00550 at 64.986 kb on - strand at 65.069 kb on - strand at 65.074 kb on - strand at 65.087 kb on + strand at 65.173 kb on + strand at 65.175 kb on + strand at 65.486 kb on - strand, within PGA1_262p00560 at 65.527 kb on - strand, within PGA1_262p00560 at 65.596 kb on + strand, within PGA1_262p00560 at 65.619 kb on - strand, within PGA1_262p00560 at 65.681 kb on + strand, within PGA1_262p00560 at 66.019 kb on - strand, within PGA1_262p00560 at 66.035 kb on - strand, within PGA1_262p00560 at 66.311 kb on + strand, within PGA1_262p00560 at 66.365 kb on - strand at 66.532 kb on + strand, within PGA1_262p00570 at 66.540 kb on - strand, within PGA1_262p00570 at 66.540 kb on - strand, within PGA1_262p00570 at 66.542 kb on + strand, within PGA1_262p00570 at 66.542 kb on + strand, within PGA1_262p00570 at 66.661 kb on + strand, within PGA1_262p00570 at 66.692 kb on - strand, within PGA1_262p00570 at 66.751 kb on + strand at 66.754 kb on - strand at 66.761 kb on + strand at 66.844 kb on - strand at 66.924 kb on + strand at 66.932 kb on - strand, within PGA1_262p00580 at 66.932 kb on - strand, within PGA1_262p00580 at 67.007 kb on + strand, within PGA1_262p00580 at 67.007 kb on + strand, within PGA1_262p00580 at 67.055 kb on + strand, within PGA1_262p00580 at 67.063 kb on - strand, within PGA1_262p00580 at 67.135 kb on + strand, within PGA1_262p00580 at 67.137 kb on + strand, within PGA1_262p00580 at 67.197 kb on + strand, within PGA1_262p00580 at 67.205 kb on - strand, within PGA1_262p00580 at 67.234 kb on + strand, within PGA1_262p00580 at 67.240 kb on - strand, within PGA1_262p00580 at 67.368 kb on - strand, within PGA1_262p00580 at 67.368 kb on - strand, within PGA1_262p00580
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml remove 64,240 - PGA1_262p00550 0.37 +0.6 64,342 - PGA1_262p00550 0.45 +0.1 64,376 + PGA1_262p00550 0.48 -1.7 64,475 + PGA1_262p00550 0.56 -1.0 64,592 - PGA1_262p00550 0.65 -1.3 64,654 - PGA1_262p00550 0.70 -0.2 64,793 - PGA1_262p00550 0.81 +0.2 64,793 - PGA1_262p00550 0.81 +0.7 64,856 + PGA1_262p00550 0.86 -0.1 64,986 - -1.2 65,069 - +0.6 65,074 - +1.0 65,087 + +0.0 65,173 + +0.0 65,175 + -0.0 65,486 - PGA1_262p00560 0.31 -0.8 65,527 - PGA1_262p00560 0.34 +0.6 65,596 + PGA1_262p00560 0.39 +3.5 65,619 - PGA1_262p00560 0.41 +0.5 65,681 + PGA1_262p00560 0.45 +0.4 66,019 - PGA1_262p00560 0.68 +1.0 66,035 - PGA1_262p00560 0.69 +0.0 66,311 + PGA1_262p00560 0.88 +1.0 66,365 - -1.0 66,532 + PGA1_262p00570 0.10 +0.5 66,540 - PGA1_262p00570 0.13 +0.5 66,540 - PGA1_262p00570 0.13 +0.2 66,542 + PGA1_262p00570 0.14 +0.2 66,542 + PGA1_262p00570 0.14 +0.2 66,661 + PGA1_262p00570 0.60 -0.6 66,692 - PGA1_262p00570 0.72 -0.2 66,751 + -0.6 66,754 - +0.0 66,761 + +2.2 66,844 - +0.4 66,924 + +0.4 66,932 - PGA1_262p00580 0.10 +1.4 66,932 - PGA1_262p00580 0.10 +0.4 67,007 + PGA1_262p00580 0.16 +0.0 67,007 + PGA1_262p00580 0.16 -1.1 67,055 + PGA1_262p00580 0.19 -1.1 67,063 - PGA1_262p00580 0.20 -0.7 67,135 + PGA1_262p00580 0.25 +0.4 67,137 + PGA1_262p00580 0.25 +0.5 67,197 + PGA1_262p00580 0.30 -1.3 67,205 - PGA1_262p00580 0.30 +1.0 67,234 + PGA1_262p00580 0.32 +2.3 67,240 - PGA1_262p00580 0.33 +0.9 67,368 - PGA1_262p00580 0.42 -0.1 67,368 - PGA1_262p00580 0.42 +1.7
Or see this region's nucleotide sequence