Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00340

Experiment: m.b. Phosphomycin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00330 and PGA1_262p00340 overlap by 4 nucleotidesPGA1_262p00340 and PGA1_262p00350 overlap by 8 nucleotides PGA1_262p00330: PGA1_262p00330 - oligopeptide ABC transporter, ATP binding protein, at 36,886 to 37,884 _262p00330 PGA1_262p00340: PGA1_262p00340 - oligopeptide ABC transporter, ATP binding protein, at 37,881 to 38,879 _262p00340 PGA1_262p00350: PGA1_262p00350 - metallopeptidase, family M24, at 38,872 to 40,674 _262p00350 Position (kb) 37 38 39Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 36.882 kb on + strandat 36.927 kb on + strandat 36.955 kb on + strandat 36.983 kb on + strandat 36.999 kb on + strand, within PGA1_262p00330at 37.043 kb on - strand, within PGA1_262p00330at 37.156 kb on + strand, within PGA1_262p00330at 37.218 kb on + strand, within PGA1_262p00330at 37.274 kb on - strand, within PGA1_262p00330at 37.512 kb on - strand, within PGA1_262p00330at 37.552 kb on + strand, within PGA1_262p00330at 37.552 kb on + strand, within PGA1_262p00330at 37.560 kb on - strand, within PGA1_262p00330at 37.560 kb on - strand, within PGA1_262p00330at 37.562 kb on + strand, within PGA1_262p00330at 37.603 kb on - strand, within PGA1_262p00330at 37.639 kb on - strand, within PGA1_262p00330at 37.641 kb on + strand, within PGA1_262p00330at 37.644 kb on - strand, within PGA1_262p00330at 37.698 kb on + strand, within PGA1_262p00330at 37.698 kb on + strand, within PGA1_262p00330at 37.754 kb on + strand, within PGA1_262p00330at 37.878 kb on + strandat 37.993 kb on + strand, within PGA1_262p00340at 38.079 kb on - strand, within PGA1_262p00340at 38.240 kb on + strand, within PGA1_262p00340at 38.546 kb on + strand, within PGA1_262p00340at 38.619 kb on - strand, within PGA1_262p00340at 38.730 kb on + strand, within PGA1_262p00340at 38.730 kb on + strand, within PGA1_262p00340at 38.738 kb on - strand, within PGA1_262p00340at 39.013 kb on + strandat 39.021 kb on - strandat 39.104 kb on + strand, within PGA1_262p00350at 39.147 kb on + strand, within PGA1_262p00350at 39.169 kb on + strand, within PGA1_262p00350at 39.210 kb on - strand, within PGA1_262p00350at 39.284 kb on - strand, within PGA1_262p00350at 39.471 kb on - strand, within PGA1_262p00350at 39.508 kb on - strand, within PGA1_262p00350at 39.591 kb on + strand, within PGA1_262p00350at 39.609 kb on - strand, within PGA1_262p00350at 39.666 kb on - strand, within PGA1_262p00350at 39.666 kb on - strand, within PGA1_262p00350at 39.758 kb on - strand, within PGA1_262p00350at 39.775 kb on + strand, within PGA1_262p00350at 39.775 kb on + strand, within PGA1_262p00350at 39.794 kb on - strand, within PGA1_262p00350at 39.843 kb on + strand, within PGA1_262p00350at 39.848 kb on + strand, within PGA1_262p00350at 39.866 kb on - strand, within PGA1_262p00350

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml
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36,882 + -1.2
36,927 + +1.0
36,955 + +1.1
36,983 + +0.6
36,999 + PGA1_262p00330 0.11 +0.7
37,043 - PGA1_262p00330 0.16 -0.6
37,156 + PGA1_262p00330 0.27 +0.0
37,218 + PGA1_262p00330 0.33 +1.1
37,274 - PGA1_262p00330 0.39 +0.5
37,512 - PGA1_262p00330 0.63 -1.6
37,552 + PGA1_262p00330 0.67 +0.4
37,552 + PGA1_262p00330 0.67 +0.9
37,560 - PGA1_262p00330 0.67 -0.2
37,560 - PGA1_262p00330 0.67 +0.1
37,562 + PGA1_262p00330 0.68 -0.9
37,603 - PGA1_262p00330 0.72 +0.4
37,639 - PGA1_262p00330 0.75 -0.4
37,641 + PGA1_262p00330 0.76 -0.7
37,644 - PGA1_262p00330 0.76 -0.6
37,698 + PGA1_262p00330 0.81 +0.0
37,698 + PGA1_262p00330 0.81 -0.2
37,754 + PGA1_262p00330 0.87 +1.4
37,878 + +0.4
37,993 + PGA1_262p00340 0.11 +0.7
38,079 - PGA1_262p00340 0.20 +0.4
38,240 + PGA1_262p00340 0.36 -0.4
38,546 + PGA1_262p00340 0.67 +0.7
38,619 - PGA1_262p00340 0.74 +0.7
38,730 + PGA1_262p00340 0.85 -0.8
38,730 + PGA1_262p00340 0.85 +0.7
38,738 - PGA1_262p00340 0.86 +0.4
39,013 + +2.0
39,021 - +0.4
39,104 + PGA1_262p00350 0.13 +1.2
39,147 + PGA1_262p00350 0.15 -2.6
39,169 + PGA1_262p00350 0.16 +0.7
39,210 - PGA1_262p00350 0.19 +0.4
39,284 - PGA1_262p00350 0.23 -1.4
39,471 - PGA1_262p00350 0.33 +1.0
39,508 - PGA1_262p00350 0.35 +0.6
39,591 + PGA1_262p00350 0.40 -2.2
39,609 - PGA1_262p00350 0.41 -1.0
39,666 - PGA1_262p00350 0.44 +0.7
39,666 - PGA1_262p00350 0.44 +0.3
39,758 - PGA1_262p00350 0.49 -0.6
39,775 + PGA1_262p00350 0.50 -0.0
39,775 + PGA1_262p00350 0.50 +0.1
39,794 - PGA1_262p00350 0.51 -0.4
39,843 + PGA1_262p00350 0.54 -0.4
39,848 + PGA1_262p00350 0.54 +1.1
39,866 - PGA1_262p00350 0.55 -2.8

Or see this region's nucleotide sequence