Experiment: m.b. Phosphomycin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c36130 and PGA1_c36140 are separated by 103 nucleotides PGA1_c36140 and PGA1_c36150 are separated by 116 nucleotides
PGA1_c36130: PGA1_c36130 - putative serine/threonine phosphatase, at 3,781,989 to 3,782,729
_c36130
PGA1_c36140: PGA1_c36140 - D-3-phosphoglycerate dehydrogenase SerA, at 3,782,833 to 3,784,428
_c36140
PGA1_c36150: PGA1_c36150 - phosphoserine aminotransferase SerC, at 3,784,545 to 3,785,699
_c36150
Position (kb)
3782
3783
3784
3785 Strain fitness (log2 ratio)
-2
-1
0
1 at 3781.835 kb on - strand at 3781.835 kb on - strand at 3781.877 kb on - strand at 3781.877 kb on - strand at 3781.879 kb on + strand at 3781.879 kb on + strand at 3781.887 kb on - strand at 3781.887 kb on - strand at 3781.911 kb on - strand at 3781.953 kb on + strand at 3781.968 kb on - strand at 3781.971 kb on - strand at 3782.014 kb on + strand at 3782.031 kb on + strand at 3782.039 kb on - strand at 3782.039 kb on - strand at 3782.056 kb on + strand at 3782.064 kb on - strand, within PGA1_c36130 at 3782.114 kb on - strand, within PGA1_c36130 at 3782.119 kb on + strand, within PGA1_c36130 at 3782.119 kb on + strand, within PGA1_c36130 at 3782.127 kb on - strand, within PGA1_c36130 at 3782.132 kb on + strand, within PGA1_c36130 at 3782.132 kb on + strand, within PGA1_c36130 at 3782.132 kb on + strand, within PGA1_c36130 at 3782.132 kb on + strand, within PGA1_c36130 at 3782.132 kb on + strand, within PGA1_c36130 at 3782.132 kb on + strand, within PGA1_c36130 at 3782.132 kb on - strand, within PGA1_c36130 at 3782.228 kb on + strand, within PGA1_c36130 at 3782.239 kb on + strand, within PGA1_c36130 at 3782.239 kb on + strand, within PGA1_c36130 at 3782.264 kb on - strand, within PGA1_c36130 at 3782.330 kb on - strand, within PGA1_c36130 at 3782.351 kb on - strand, within PGA1_c36130 at 3782.372 kb on - strand, within PGA1_c36130 at 3782.431 kb on - strand, within PGA1_c36130 at 3782.484 kb on - strand, within PGA1_c36130 at 3782.514 kb on - strand, within PGA1_c36130 at 3782.533 kb on + strand, within PGA1_c36130 at 3782.533 kb on + strand, within PGA1_c36130 at 3782.541 kb on - strand, within PGA1_c36130 at 3782.541 kb on - strand, within PGA1_c36130 at 3782.541 kb on - strand, within PGA1_c36130 at 3782.561 kb on + strand, within PGA1_c36130 at 3782.584 kb on - strand, within PGA1_c36130 at 3782.676 kb on - strand at 3782.676 kb on - strand at 3782.692 kb on - strand at 3782.703 kb on + strand at 3782.711 kb on - strand at 3782.711 kb on - strand at 3782.719 kb on + strand at 3782.724 kb on + strand at 3782.786 kb on + strand at 3782.816 kb on - strand at 3782.855 kb on + strand at 3782.855 kb on + strand at 3782.892 kb on - strand at 3782.947 kb on + strand at 3782.962 kb on - strand at 3782.970 kb on + strand at 3783.002 kb on + strand, within PGA1_c36140 at 3783.018 kb on + strand, within PGA1_c36140 at 3783.053 kb on + strand, within PGA1_c36140 at 3783.058 kb on + strand, within PGA1_c36140 at 3783.061 kb on - strand, within PGA1_c36140 at 3783.095 kb on + strand, within PGA1_c36140 at 3783.095 kb on + strand, within PGA1_c36140 at 3783.100 kb on + strand, within PGA1_c36140 at 3783.137 kb on + strand, within PGA1_c36140 at 3783.137 kb on + strand, within PGA1_c36140 at 3783.145 kb on - strand, within PGA1_c36140 at 3783.145 kb on - strand, within PGA1_c36140 at 3783.206 kb on + strand, within PGA1_c36140 at 3783.250 kb on + strand, within PGA1_c36140 at 3783.255 kb on + strand, within PGA1_c36140 at 3783.258 kb on - strand, within PGA1_c36140 at 3783.258 kb on - strand, within PGA1_c36140 at 3783.258 kb on - strand, within PGA1_c36140 at 3783.258 kb on - strand, within PGA1_c36140 at 3783.322 kb on + strand, within PGA1_c36140 at 3783.330 kb on - strand, within PGA1_c36140 at 3783.330 kb on - strand, within PGA1_c36140 at 3783.356 kb on + strand, within PGA1_c36140 at 3783.364 kb on - strand, within PGA1_c36140 at 3783.378 kb on + strand, within PGA1_c36140 at 3783.421 kb on - strand, within PGA1_c36140 at 3783.432 kb on + strand, within PGA1_c36140 at 3783.440 kb on - strand, within PGA1_c36140 at 3783.440 kb on - strand, within PGA1_c36140 at 3783.446 kb on - strand, within PGA1_c36140 at 3783.462 kb on + strand, within PGA1_c36140 at 3783.479 kb on + strand, within PGA1_c36140 at 3783.580 kb on + strand, within PGA1_c36140 at 3783.586 kb on - strand, within PGA1_c36140 at 3783.593 kb on + strand, within PGA1_c36140 at 3783.602 kb on + strand, within PGA1_c36140 at 3783.602 kb on + strand, within PGA1_c36140 at 3783.637 kb on - strand, within PGA1_c36140 at 3783.685 kb on + strand, within PGA1_c36140 at 3783.696 kb on - strand, within PGA1_c36140 at 3783.701 kb on - strand, within PGA1_c36140 at 3783.707 kb on + strand, within PGA1_c36140 at 3783.715 kb on - strand, within PGA1_c36140 at 3783.715 kb on - strand, within PGA1_c36140 at 3783.720 kb on + strand, within PGA1_c36140 at 3783.806 kb on + strand, within PGA1_c36140 at 3783.813 kb on - strand, within PGA1_c36140 at 3783.814 kb on - strand, within PGA1_c36140 at 3783.824 kb on - strand, within PGA1_c36140 at 3783.824 kb on - strand, within PGA1_c36140 at 3783.901 kb on + strand, within PGA1_c36140 at 3783.909 kb on + strand, within PGA1_c36140 at 3783.917 kb on - strand, within PGA1_c36140 at 3783.923 kb on + strand, within PGA1_c36140 at 3783.949 kb on + strand, within PGA1_c36140 at 3783.990 kb on - strand, within PGA1_c36140 at 3783.995 kb on - strand, within PGA1_c36140 at 3784.059 kb on - strand, within PGA1_c36140 at 3784.063 kb on + strand, within PGA1_c36140 at 3784.085 kb on + strand, within PGA1_c36140 at 3784.105 kb on + strand, within PGA1_c36140 at 3784.121 kb on + strand, within PGA1_c36140 at 3784.169 kb on - strand, within PGA1_c36140 at 3784.180 kb on - strand, within PGA1_c36140 at 3784.220 kb on + strand, within PGA1_c36140 at 3784.220 kb on + strand, within PGA1_c36140 at 3784.221 kb on + strand, within PGA1_c36140 at 3784.228 kb on - strand, within PGA1_c36140 at 3784.228 kb on - strand, within PGA1_c36140 at 3784.228 kb on - strand, within PGA1_c36140 at 3784.229 kb on - strand, within PGA1_c36140 at 3784.229 kb on - strand, within PGA1_c36140 at 3784.229 kb on - strand, within PGA1_c36140 at 3784.229 kb on - strand, within PGA1_c36140 at 3784.240 kb on + strand, within PGA1_c36140 at 3784.325 kb on + strand at 3784.481 kb on + strand at 3784.522 kb on + strand at 3784.524 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml remove 3,781,835 - +0.2 3,781,835 - -0.1 3,781,877 - -0.3 3,781,877 - -0.2 3,781,879 + +0.4 3,781,879 + -0.6 3,781,887 - -0.3 3,781,887 - -0.4 3,781,911 - -0.0 3,781,953 + +0.7 3,781,968 - -0.4 3,781,971 - +0.0 3,782,014 + +0.4 3,782,031 + -0.0 3,782,039 - -0.5 3,782,039 - +1.0 3,782,056 + +0.5 3,782,064 - PGA1_c36130 0.10 -0.9 3,782,114 - PGA1_c36130 0.17 +0.2 3,782,119 + PGA1_c36130 0.18 +1.5 3,782,119 + PGA1_c36130 0.18 -2.7 3,782,127 - PGA1_c36130 0.19 +0.5 3,782,132 + PGA1_c36130 0.19 -0.6 3,782,132 + PGA1_c36130 0.19 -0.7 3,782,132 + PGA1_c36130 0.19 -0.1 3,782,132 + PGA1_c36130 0.19 +0.6 3,782,132 + PGA1_c36130 0.19 +0.6 3,782,132 + PGA1_c36130 0.19 -0.1 3,782,132 - PGA1_c36130 0.19 +0.7 3,782,228 + PGA1_c36130 0.32 -0.1 3,782,239 + PGA1_c36130 0.34 -0.2 3,782,239 + PGA1_c36130 0.34 +0.2 3,782,264 - PGA1_c36130 0.37 -0.2 3,782,330 - PGA1_c36130 0.46 +0.9 3,782,351 - PGA1_c36130 0.49 +0.9 3,782,372 - PGA1_c36130 0.52 +1.2 3,782,431 - PGA1_c36130 0.60 -0.7 3,782,484 - PGA1_c36130 0.67 +0.9 3,782,514 - PGA1_c36130 0.71 +0.9 3,782,533 + PGA1_c36130 0.73 +1.2 3,782,533 + PGA1_c36130 0.73 -0.3 3,782,541 - PGA1_c36130 0.74 -1.9 3,782,541 - PGA1_c36130 0.74 +0.7 3,782,541 - PGA1_c36130 0.74 -1.8 3,782,561 + PGA1_c36130 0.77 -0.3 3,782,584 - PGA1_c36130 0.80 +0.8 3,782,676 - -0.4 3,782,676 - -0.5 3,782,692 - -0.1 3,782,703 + -0.7 3,782,711 - -0.4 3,782,711 - +0.9 3,782,719 + +0.4 3,782,724 + +0.3 3,782,786 + -0.1 3,782,816 - -0.1 3,782,855 + +0.5 3,782,855 + +0.1 3,782,892 - +0.6 3,782,947 + -0.3 3,782,962 - -1.1 3,782,970 + -1.4 3,783,002 + PGA1_c36140 0.11 -1.1 3,783,018 + PGA1_c36140 0.12 -0.2 3,783,053 + PGA1_c36140 0.14 -1.4 3,783,058 + PGA1_c36140 0.14 -0.3 3,783,061 - PGA1_c36140 0.14 -0.3 3,783,095 + PGA1_c36140 0.16 -0.7 3,783,095 + PGA1_c36140 0.16 -0.3 3,783,100 + PGA1_c36140 0.17 +0.3 3,783,137 + PGA1_c36140 0.19 -0.0 3,783,137 + PGA1_c36140 0.19 -0.1 3,783,145 - PGA1_c36140 0.20 -0.4 3,783,145 - PGA1_c36140 0.20 -0.0 3,783,206 + PGA1_c36140 0.23 -0.4 3,783,250 + PGA1_c36140 0.26 -0.1 3,783,255 + PGA1_c36140 0.26 -0.9 3,783,258 - PGA1_c36140 0.27 -2.1 3,783,258 - PGA1_c36140 0.27 -1.3 3,783,258 - PGA1_c36140 0.27 +0.1 3,783,258 - PGA1_c36140 0.27 -1.3 3,783,322 + PGA1_c36140 0.31 -0.8 3,783,330 - PGA1_c36140 0.31 -1.2 3,783,330 - PGA1_c36140 0.31 -0.7 3,783,356 + PGA1_c36140 0.33 -1.2 3,783,364 - PGA1_c36140 0.33 +0.7 3,783,378 + PGA1_c36140 0.34 -0.4 3,783,421 - PGA1_c36140 0.37 -0.6 3,783,432 + PGA1_c36140 0.38 -0.9 3,783,440 - PGA1_c36140 0.38 -0.2 3,783,440 - PGA1_c36140 0.38 -0.1 3,783,446 - PGA1_c36140 0.38 -1.4 3,783,462 + PGA1_c36140 0.39 -1.6 3,783,479 + PGA1_c36140 0.40 -0.5 3,783,580 + PGA1_c36140 0.47 -0.3 3,783,586 - PGA1_c36140 0.47 -1.3 3,783,593 + PGA1_c36140 0.48 +0.5 3,783,602 + PGA1_c36140 0.48 -0.7 3,783,602 + PGA1_c36140 0.48 +0.0 3,783,637 - PGA1_c36140 0.50 +0.5 3,783,685 + PGA1_c36140 0.53 -0.1 3,783,696 - PGA1_c36140 0.54 -0.1 3,783,701 - PGA1_c36140 0.54 +0.9 3,783,707 + PGA1_c36140 0.55 -1.1 3,783,715 - PGA1_c36140 0.55 +0.3 3,783,715 - PGA1_c36140 0.55 -0.1 3,783,720 + PGA1_c36140 0.56 -0.1 3,783,806 + PGA1_c36140 0.61 -0.7 3,783,813 - PGA1_c36140 0.61 -2.0 3,783,814 - PGA1_c36140 0.61 +0.4 3,783,824 - PGA1_c36140 0.62 -0.5 3,783,824 - PGA1_c36140 0.62 +0.3 3,783,901 + PGA1_c36140 0.67 +0.9 3,783,909 + PGA1_c36140 0.67 +0.8 3,783,917 - PGA1_c36140 0.68 +0.2 3,783,923 + PGA1_c36140 0.68 -0.7 3,783,949 + PGA1_c36140 0.70 -2.4 3,783,990 - PGA1_c36140 0.72 -2.0 3,783,995 - PGA1_c36140 0.73 -0.5 3,784,059 - PGA1_c36140 0.77 +1.2 3,784,063 + PGA1_c36140 0.77 -0.6 3,784,085 + PGA1_c36140 0.78 +0.1 3,784,105 + PGA1_c36140 0.80 -0.8 3,784,121 + PGA1_c36140 0.81 -0.1 3,784,169 - PGA1_c36140 0.84 -0.6 3,784,180 - PGA1_c36140 0.84 +0.5 3,784,220 + PGA1_c36140 0.87 -0.4 3,784,220 + PGA1_c36140 0.87 +0.4 3,784,221 + PGA1_c36140 0.87 -0.4 3,784,228 - PGA1_c36140 0.87 -1.1 3,784,228 - PGA1_c36140 0.87 +0.0 3,784,228 - PGA1_c36140 0.87 +0.1 3,784,229 - PGA1_c36140 0.87 +0.1 3,784,229 - PGA1_c36140 0.87 +0.8 3,784,229 - PGA1_c36140 0.87 -0.7 3,784,229 - PGA1_c36140 0.87 +0.1 3,784,240 + PGA1_c36140 0.88 -0.3 3,784,325 + -1.2 3,784,481 + +1.2 3,784,522 + -0.1 3,784,524 + +1.4
Or see this region's nucleotide sequence