Experiment: m.b. Phosphomycin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c34580 and PGA1_c34590 are separated by 177 nucleotides PGA1_c34590 and PGA1_c34600 are separated by 2 nucleotides
PGA1_c34580: PGA1_c34580 - protein translocase subunit SecA, at 3,626,764 to 3,629,463
_c34580
PGA1_c34590: PGA1_c34590 - putative peptidylprolyl isomerase, at 3,629,641 to 3,630,492
_c34590
PGA1_c34600: PGA1_c34600 - arginine biosynthesis bifunctional protein ArgJ, at 3,630,495 to 3,631,724
_c34600
Position (kb)
3629
3630
3631 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3629.596 kb on + strand at 3629.610 kb on - strand at 3629.616 kb on - strand at 3629.617 kb on - strand at 3629.643 kb on + strand at 3629.651 kb on - strand at 3629.658 kb on - strand at 3629.658 kb on - strand at 3629.669 kb on + strand at 3629.675 kb on + strand at 3629.687 kb on + strand at 3629.695 kb on - strand at 3629.703 kb on + strand at 3629.705 kb on - strand at 3629.705 kb on - strand at 3629.713 kb on + strand at 3629.718 kb on + strand at 3629.727 kb on - strand, within PGA1_c34590 at 3629.794 kb on + strand, within PGA1_c34590 at 3629.794 kb on + strand, within PGA1_c34590 at 3629.804 kb on + strand, within PGA1_c34590 at 3629.818 kb on - strand, within PGA1_c34590 at 3629.823 kb on - strand, within PGA1_c34590 at 3629.845 kb on + strand, within PGA1_c34590 at 3629.871 kb on - strand, within PGA1_c34590 at 3629.998 kb on + strand, within PGA1_c34590 at 3630.059 kb on - strand, within PGA1_c34590 at 3630.070 kb on - strand, within PGA1_c34590 at 3630.163 kb on - strand, within PGA1_c34590 at 3630.163 kb on - strand, within PGA1_c34590 at 3630.184 kb on + strand, within PGA1_c34590 at 3630.187 kb on - strand, within PGA1_c34590 at 3630.192 kb on - strand, within PGA1_c34590 at 3630.205 kb on + strand, within PGA1_c34590 at 3630.246 kb on - strand, within PGA1_c34590 at 3630.318 kb on + strand, within PGA1_c34590 at 3630.343 kb on - strand, within PGA1_c34590 at 3630.355 kb on + strand, within PGA1_c34590 at 3630.385 kb on + strand, within PGA1_c34590 at 3630.393 kb on - strand, within PGA1_c34590 at 3630.432 kb on + strand at 3630.511 kb on - strand at 3630.556 kb on - strand at 3630.627 kb on + strand, within PGA1_c34600 at 3630.635 kb on - strand, within PGA1_c34600 at 3630.684 kb on + strand, within PGA1_c34600 at 3630.684 kb on + strand, within PGA1_c34600 at 3630.684 kb on + strand, within PGA1_c34600 at 3630.692 kb on - strand, within PGA1_c34600 at 3630.692 kb on - strand, within PGA1_c34600 at 3630.692 kb on - strand, within PGA1_c34600 at 3630.692 kb on - strand, within PGA1_c34600 at 3630.692 kb on - strand, within PGA1_c34600 at 3630.692 kb on - strand, within PGA1_c34600 at 3630.702 kb on + strand, within PGA1_c34600 at 3630.741 kb on + strand, within PGA1_c34600 at 3630.797 kb on - strand, within PGA1_c34600 at 3630.797 kb on - strand, within PGA1_c34600 at 3630.812 kb on + strand, within PGA1_c34600 at 3630.820 kb on - strand, within PGA1_c34600 at 3630.862 kb on - strand, within PGA1_c34600 at 3630.949 kb on - strand, within PGA1_c34600 at 3630.966 kb on + strand, within PGA1_c34600 at 3631.050 kb on - strand, within PGA1_c34600 at 3631.073 kb on + strand, within PGA1_c34600 at 3631.188 kb on + strand, within PGA1_c34600 at 3631.196 kb on - strand, within PGA1_c34600 at 3631.234 kb on - strand, within PGA1_c34600 at 3631.391 kb on + strand, within PGA1_c34600 at 3631.430 kb on + strand, within PGA1_c34600 at 3631.438 kb on - strand, within PGA1_c34600 at 3631.455 kb on + strand, within PGA1_c34600
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml remove 3,629,596 + +1.6 3,629,610 - +0.4 3,629,616 - -1.7 3,629,617 - +0.6 3,629,643 + +0.1 3,629,651 - +2.3 3,629,658 - +0.1 3,629,658 - +0.7 3,629,669 + -0.1 3,629,675 + +1.6 3,629,687 + +0.6 3,629,695 - +1.4 3,629,703 + -0.0 3,629,705 - +1.6 3,629,705 - +0.5 3,629,713 + +0.1 3,629,718 + +1.2 3,629,727 - PGA1_c34590 0.10 -0.1 3,629,794 + PGA1_c34590 0.18 +0.5 3,629,794 + PGA1_c34590 0.18 +1.7 3,629,804 + PGA1_c34590 0.19 +0.2 3,629,818 - PGA1_c34590 0.21 +0.9 3,629,823 - PGA1_c34590 0.21 -0.7 3,629,845 + PGA1_c34590 0.24 +0.2 3,629,871 - PGA1_c34590 0.27 +0.5 3,629,998 + PGA1_c34590 0.42 +0.2 3,630,059 - PGA1_c34590 0.49 +1.6 3,630,070 - PGA1_c34590 0.50 -0.2 3,630,163 - PGA1_c34590 0.61 +0.7 3,630,163 - PGA1_c34590 0.61 +0.9 3,630,184 + PGA1_c34590 0.64 +0.2 3,630,187 - PGA1_c34590 0.64 -1.1 3,630,192 - PGA1_c34590 0.65 +0.9 3,630,205 + PGA1_c34590 0.66 +1.0 3,630,246 - PGA1_c34590 0.71 -0.3 3,630,318 + PGA1_c34590 0.79 +0.5 3,630,343 - PGA1_c34590 0.82 +2.1 3,630,355 + PGA1_c34590 0.84 +0.3 3,630,385 + PGA1_c34590 0.87 +0.8 3,630,393 - PGA1_c34590 0.88 -0.5 3,630,432 + +0.7 3,630,511 - +0.5 3,630,556 - +0.4 3,630,627 + PGA1_c34600 0.11 +0.7 3,630,635 - PGA1_c34600 0.11 +0.3 3,630,684 + PGA1_c34600 0.15 +0.1 3,630,684 + PGA1_c34600 0.15 +0.9 3,630,684 + PGA1_c34600 0.15 +0.6 3,630,692 - PGA1_c34600 0.16 -0.3 3,630,692 - PGA1_c34600 0.16 -0.2 3,630,692 - PGA1_c34600 0.16 -0.1 3,630,692 - PGA1_c34600 0.16 -0.4 3,630,692 - PGA1_c34600 0.16 -0.1 3,630,692 - PGA1_c34600 0.16 +0.0 3,630,702 + PGA1_c34600 0.17 +0.8 3,630,741 + PGA1_c34600 0.20 -1.3 3,630,797 - PGA1_c34600 0.25 -0.3 3,630,797 - PGA1_c34600 0.25 +0.6 3,630,812 + PGA1_c34600 0.26 +0.2 3,630,820 - PGA1_c34600 0.26 -1.1 3,630,862 - PGA1_c34600 0.30 +0.2 3,630,949 - PGA1_c34600 0.37 +0.0 3,630,966 + PGA1_c34600 0.38 -0.1 3,631,050 - PGA1_c34600 0.45 +0.6 3,631,073 + PGA1_c34600 0.47 -0.3 3,631,188 + PGA1_c34600 0.56 -0.6 3,631,196 - PGA1_c34600 0.57 -2.8 3,631,234 - PGA1_c34600 0.60 -0.2 3,631,391 + PGA1_c34600 0.73 +0.0 3,631,430 + PGA1_c34600 0.76 +0.1 3,631,438 - PGA1_c34600 0.77 +1.1 3,631,455 + PGA1_c34600 0.78 +0.1
Or see this region's nucleotide sequence