Strain Fitness in Marinobacter adhaerens HP15 around HP15_3267

Experiment: m.b. nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3265 and HP15_3266 are separated by 50 nucleotidesHP15_3266 and HP15_3267 are separated by 158 nucleotidesHP15_3267 and HP15_3268 are separated by 1 nucleotides HP15_3265: HP15_3265 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 3,421,680 to 3,423,311 _3265 HP15_3266: HP15_3266 - conserved hypothetical protein, at 3,423,362 to 3,423,676 _3266 HP15_3267: HP15_3267 - lipase precursor, at 3,423,835 to 3,424,734 _3267 HP15_3268: HP15_3268 - lipase chaperone, at 3,424,736 to 3,425,845 _3268 Position (kb) 3423 3424 3425Strain fitness (log2 ratio) -1 0 1at 3422.861 kb on - strand, within HP15_3265at 3422.916 kb on - strand, within HP15_3265at 3423.055 kb on + strand, within HP15_3265at 3423.055 kb on - strand, within HP15_3265at 3423.063 kb on - strand, within HP15_3265at 3423.104 kb on + strand, within HP15_3265at 3423.118 kb on + strand, within HP15_3265at 3423.158 kb on - strandat 3423.415 kb on - strand, within HP15_3266at 3423.501 kb on - strand, within HP15_3266at 3423.547 kb on - strand, within HP15_3266at 3423.601 kb on + strand, within HP15_3266at 3423.601 kb on + strand, within HP15_3266at 3423.609 kb on - strand, within HP15_3266at 3423.609 kb on - strand, within HP15_3266at 3423.804 kb on + strandat 3423.835 kb on + strandat 3423.881 kb on + strandat 3423.912 kb on + strandat 3423.938 kb on - strand, within HP15_3267at 3424.002 kb on + strand, within HP15_3267at 3424.002 kb on + strand, within HP15_3267at 3424.010 kb on - strand, within HP15_3267at 3424.010 kb on - strand, within HP15_3267at 3424.010 kb on - strand, within HP15_3267at 3424.076 kb on + strand, within HP15_3267at 3424.114 kb on - strand, within HP15_3267at 3424.134 kb on + strand, within HP15_3267at 3424.165 kb on + strand, within HP15_3267at 3424.267 kb on + strand, within HP15_3267at 3424.279 kb on + strand, within HP15_3267at 3424.300 kb on + strand, within HP15_3267at 3424.305 kb on + strand, within HP15_3267at 3424.360 kb on - strand, within HP15_3267at 3424.437 kb on + strand, within HP15_3267at 3424.481 kb on + strand, within HP15_3267at 3424.545 kb on - strand, within HP15_3267at 3424.682 kb on + strandat 3424.794 kb on + strandat 3424.821 kb on + strandat 3424.829 kb on - strandat 3424.831 kb on + strandat 3424.849 kb on - strand, within HP15_3268at 3424.889 kb on + strand, within HP15_3268at 3425.076 kb on + strand, within HP15_3268at 3425.153 kb on + strand, within HP15_3268at 3425.322 kb on + strand, within HP15_3268at 3425.330 kb on - strand, within HP15_3268at 3425.332 kb on + strand, within HP15_3268at 3425.332 kb on + strand, within HP15_3268at 3425.350 kb on - strand, within HP15_3268at 3425.388 kb on + strand, within HP15_3268at 3425.396 kb on - strand, within HP15_3268at 3425.398 kb on + strand, within HP15_3268at 3425.440 kb on - strand, within HP15_3268at 3425.442 kb on + strand, within HP15_3268at 3425.442 kb on + strand, within HP15_3268at 3425.447 kb on + strand, within HP15_3268at 3425.450 kb on - strand, within HP15_3268at 3425.482 kb on - strand, within HP15_3268at 3425.620 kb on - strand, within HP15_3268at 3425.627 kb on - strand, within HP15_3268at 3425.630 kb on + strand, within HP15_3268at 3425.638 kb on - strand, within HP15_3268at 3425.669 kb on - strand, within HP15_3268at 3425.707 kb on - strand, within HP15_3268

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM
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3,422,861 - HP15_3265 0.72 -1.0
3,422,916 - HP15_3265 0.76 -1.4
3,423,055 + HP15_3265 0.84 -1.0
3,423,055 - HP15_3265 0.84 -0.6
3,423,063 - HP15_3265 0.85 -0.2
3,423,104 + HP15_3265 0.87 -0.6
3,423,118 + HP15_3265 0.88 -0.2
3,423,158 - +0.0
3,423,415 - HP15_3266 0.17 -0.5
3,423,501 - HP15_3266 0.44 +0.2
3,423,547 - HP15_3266 0.59 +0.8
3,423,601 + HP15_3266 0.76 -0.0
3,423,601 + HP15_3266 0.76 -0.7
3,423,609 - HP15_3266 0.78 -1.3
3,423,609 - HP15_3266 0.78 -0.2
3,423,804 + +0.0
3,423,835 + +0.3
3,423,881 + +0.0
3,423,912 + -0.6
3,423,938 - HP15_3267 0.11 -0.6
3,424,002 + HP15_3267 0.19 +0.0
3,424,002 + HP15_3267 0.19 -0.3
3,424,010 - HP15_3267 0.19 +0.0
3,424,010 - HP15_3267 0.19 +0.3
3,424,010 - HP15_3267 0.19 -0.9
3,424,076 + HP15_3267 0.27 -1.2
3,424,114 - HP15_3267 0.31 +0.4
3,424,134 + HP15_3267 0.33 -0.2
3,424,165 + HP15_3267 0.37 -0.6
3,424,267 + HP15_3267 0.48 -1.1
3,424,279 + HP15_3267 0.49 +1.1
3,424,300 + HP15_3267 0.52 -0.6
3,424,305 + HP15_3267 0.52 -0.3
3,424,360 - HP15_3267 0.58 +0.2
3,424,437 + HP15_3267 0.67 -0.5
3,424,481 + HP15_3267 0.72 -1.0
3,424,545 - HP15_3267 0.79 +0.5
3,424,682 + -0.0
3,424,794 + +0.2
3,424,821 + +0.2
3,424,829 - -0.6
3,424,831 + -0.2
3,424,849 - HP15_3268 0.10 +0.3
3,424,889 + HP15_3268 0.14 -0.1
3,425,076 + HP15_3268 0.31 +0.3
3,425,153 + HP15_3268 0.38 +0.0
3,425,322 + HP15_3268 0.53 +0.5
3,425,330 - HP15_3268 0.54 -0.3
3,425,332 + HP15_3268 0.54 -0.3
3,425,332 + HP15_3268 0.54 -1.1
3,425,350 - HP15_3268 0.55 +0.1
3,425,388 + HP15_3268 0.59 +0.5
3,425,396 - HP15_3268 0.59 +0.3
3,425,398 + HP15_3268 0.60 +0.6
3,425,440 - HP15_3268 0.63 -0.8
3,425,442 + HP15_3268 0.64 +0.2
3,425,442 + HP15_3268 0.64 +0.2
3,425,447 + HP15_3268 0.64 -0.7
3,425,450 - HP15_3268 0.64 -0.8
3,425,482 - HP15_3268 0.67 +0.1
3,425,620 - HP15_3268 0.80 -0.2
3,425,627 - HP15_3268 0.80 -0.2
3,425,630 + HP15_3268 0.81 -0.3
3,425,638 - HP15_3268 0.81 +0.2
3,425,669 - HP15_3268 0.84 +1.1
3,425,707 - HP15_3268 0.87 -0.6

Or see this region's nucleotide sequence