Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3265 and HP15_3266 are separated by 50 nucleotides HP15_3266 and HP15_3267 are separated by 158 nucleotides HP15_3267 and HP15_3268 are separated by 1 nucleotides
HP15_3265: HP15_3265 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 3,421,680 to 3,423,311
_3265
HP15_3266: HP15_3266 - conserved hypothetical protein, at 3,423,362 to 3,423,676
_3266
HP15_3267: HP15_3267 - lipase precursor, at 3,423,835 to 3,424,734
_3267
HP15_3268: HP15_3268 - lipase chaperone, at 3,424,736 to 3,425,845
_3268
Position (kb)
3423
3424
3425 Strain fitness (log2 ratio)
-1
0
1 at 3422.861 kb on - strand, within HP15_3265 at 3422.916 kb on - strand, within HP15_3265 at 3423.055 kb on + strand, within HP15_3265 at 3423.055 kb on - strand, within HP15_3265 at 3423.063 kb on - strand, within HP15_3265 at 3423.104 kb on + strand, within HP15_3265 at 3423.118 kb on + strand, within HP15_3265 at 3423.158 kb on - strand at 3423.415 kb on - strand, within HP15_3266 at 3423.501 kb on - strand, within HP15_3266 at 3423.547 kb on - strand, within HP15_3266 at 3423.601 kb on + strand, within HP15_3266 at 3423.601 kb on + strand, within HP15_3266 at 3423.609 kb on - strand, within HP15_3266 at 3423.609 kb on - strand, within HP15_3266 at 3423.804 kb on + strand at 3423.835 kb on + strand at 3423.881 kb on + strand at 3423.912 kb on + strand at 3423.938 kb on - strand, within HP15_3267 at 3424.002 kb on + strand, within HP15_3267 at 3424.002 kb on + strand, within HP15_3267 at 3424.010 kb on - strand, within HP15_3267 at 3424.010 kb on - strand, within HP15_3267 at 3424.010 kb on - strand, within HP15_3267 at 3424.076 kb on + strand, within HP15_3267 at 3424.114 kb on - strand, within HP15_3267 at 3424.134 kb on + strand, within HP15_3267 at 3424.165 kb on + strand, within HP15_3267 at 3424.267 kb on + strand, within HP15_3267 at 3424.279 kb on + strand, within HP15_3267 at 3424.300 kb on + strand, within HP15_3267 at 3424.305 kb on + strand, within HP15_3267 at 3424.360 kb on - strand, within HP15_3267 at 3424.437 kb on + strand, within HP15_3267 at 3424.481 kb on + strand, within HP15_3267 at 3424.545 kb on - strand, within HP15_3267 at 3424.682 kb on + strand at 3424.794 kb on + strand at 3424.821 kb on + strand at 3424.829 kb on - strand at 3424.831 kb on + strand at 3424.849 kb on - strand, within HP15_3268 at 3424.889 kb on + strand, within HP15_3268 at 3425.076 kb on + strand, within HP15_3268 at 3425.153 kb on + strand, within HP15_3268 at 3425.322 kb on + strand, within HP15_3268 at 3425.330 kb on - strand, within HP15_3268 at 3425.332 kb on + strand, within HP15_3268 at 3425.332 kb on + strand, within HP15_3268 at 3425.350 kb on - strand, within HP15_3268 at 3425.388 kb on + strand, within HP15_3268 at 3425.396 kb on - strand, within HP15_3268 at 3425.398 kb on + strand, within HP15_3268 at 3425.440 kb on - strand, within HP15_3268 at 3425.442 kb on + strand, within HP15_3268 at 3425.442 kb on + strand, within HP15_3268 at 3425.447 kb on + strand, within HP15_3268 at 3425.450 kb on - strand, within HP15_3268 at 3425.482 kb on - strand, within HP15_3268 at 3425.620 kb on - strand, within HP15_3268 at 3425.627 kb on - strand, within HP15_3268 at 3425.630 kb on + strand, within HP15_3268 at 3425.638 kb on - strand, within HP15_3268 at 3425.669 kb on - strand, within HP15_3268 at 3425.707 kb on - strand, within HP15_3268
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 3,422,861 - HP15_3265 0.72 -1.0 3,422,916 - HP15_3265 0.76 -1.4 3,423,055 + HP15_3265 0.84 -1.0 3,423,055 - HP15_3265 0.84 -0.6 3,423,063 - HP15_3265 0.85 -0.2 3,423,104 + HP15_3265 0.87 -0.6 3,423,118 + HP15_3265 0.88 -0.2 3,423,158 - +0.0 3,423,415 - HP15_3266 0.17 -0.5 3,423,501 - HP15_3266 0.44 +0.2 3,423,547 - HP15_3266 0.59 +0.8 3,423,601 + HP15_3266 0.76 -0.0 3,423,601 + HP15_3266 0.76 -0.7 3,423,609 - HP15_3266 0.78 -1.3 3,423,609 - HP15_3266 0.78 -0.2 3,423,804 + +0.0 3,423,835 + +0.3 3,423,881 + +0.0 3,423,912 + -0.6 3,423,938 - HP15_3267 0.11 -0.6 3,424,002 + HP15_3267 0.19 +0.0 3,424,002 + HP15_3267 0.19 -0.3 3,424,010 - HP15_3267 0.19 +0.0 3,424,010 - HP15_3267 0.19 +0.3 3,424,010 - HP15_3267 0.19 -0.9 3,424,076 + HP15_3267 0.27 -1.2 3,424,114 - HP15_3267 0.31 +0.4 3,424,134 + HP15_3267 0.33 -0.2 3,424,165 + HP15_3267 0.37 -0.6 3,424,267 + HP15_3267 0.48 -1.1 3,424,279 + HP15_3267 0.49 +1.1 3,424,300 + HP15_3267 0.52 -0.6 3,424,305 + HP15_3267 0.52 -0.3 3,424,360 - HP15_3267 0.58 +0.2 3,424,437 + HP15_3267 0.67 -0.5 3,424,481 + HP15_3267 0.72 -1.0 3,424,545 - HP15_3267 0.79 +0.5 3,424,682 + -0.0 3,424,794 + +0.2 3,424,821 + +0.2 3,424,829 - -0.6 3,424,831 + -0.2 3,424,849 - HP15_3268 0.10 +0.3 3,424,889 + HP15_3268 0.14 -0.1 3,425,076 + HP15_3268 0.31 +0.3 3,425,153 + HP15_3268 0.38 +0.0 3,425,322 + HP15_3268 0.53 +0.5 3,425,330 - HP15_3268 0.54 -0.3 3,425,332 + HP15_3268 0.54 -0.3 3,425,332 + HP15_3268 0.54 -1.1 3,425,350 - HP15_3268 0.55 +0.1 3,425,388 + HP15_3268 0.59 +0.5 3,425,396 - HP15_3268 0.59 +0.3 3,425,398 + HP15_3268 0.60 +0.6 3,425,440 - HP15_3268 0.63 -0.8 3,425,442 + HP15_3268 0.64 +0.2 3,425,442 + HP15_3268 0.64 +0.2 3,425,447 + HP15_3268 0.64 -0.7 3,425,450 - HP15_3268 0.64 -0.8 3,425,482 - HP15_3268 0.67 +0.1 3,425,620 - HP15_3268 0.80 -0.2 3,425,627 - HP15_3268 0.80 -0.2 3,425,630 + HP15_3268 0.81 -0.3 3,425,638 - HP15_3268 0.81 +0.2 3,425,669 - HP15_3268 0.84 +1.1 3,425,707 - HP15_3268 0.87 -0.6
Or see this region's nucleotide sequence