Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_328 and HP15_329 are separated by 7 nucleotides HP15_329 and HP15_330 overlap by 11 nucleotides HP15_330 and HP15_331 are separated by 50 nucleotides
HP15_328: HP15_328 - two component, sigma54 specific, transcriptional regulator, Fis family, at 324,234 to 325,637
_328
HP15_329: HP15_329 - two-component sensor, at 325,645 to 328,608
_329
HP15_330: HP15_330 - conserved hypothetical protein, membrane, at 328,598 to 328,774
_330
HP15_331: HP15_331 - glutamyl-Q tRNA(Asp) synthetase, at 328,825 to 329,697
_331
Position (kb) 325
326
327
328
329 Strain fitness (log2 ratio) -1
0
1 at 325.142 kb on - strand, within HP15_328 at 325.777 kb on - strand at 325.841 kb on - strand at 326.478 kb on + strand, within HP15_329 at 326.806 kb on + strand, within HP15_329 at 326.932 kb on - strand, within HP15_329 at 326.932 kb on - strand, within HP15_329 at 326.932 kb on - strand, within HP15_329 at 327.103 kb on + strand, within HP15_329 at 327.111 kb on - strand, within HP15_329 at 327.624 kb on + strand, within HP15_329 at 327.784 kb on - strand, within HP15_329 at 328.094 kb on - strand, within HP15_329 at 328.341 kb on - strand at 328.525 kb on - strand at 328.668 kb on - strand, within HP15_330 at 328.679 kb on - strand, within HP15_330 at 328.808 kb on + strand at 328.808 kb on + strand at 328.808 kb on + strand at 328.816 kb on - strand at 328.816 kb on - strand at 329.001 kb on - strand, within HP15_331 at 329.099 kb on + strand, within HP15_331 at 329.112 kb on - strand, within HP15_331 at 329.120 kb on - strand, within HP15_331 at 329.120 kb on - strand, within HP15_331 at 329.131 kb on - strand, within HP15_331 at 329.180 kb on + strand, within HP15_331 at 329.188 kb on - strand, within HP15_331 at 329.188 kb on - strand, within HP15_331 at 329.193 kb on - strand, within HP15_331 at 329.223 kb on - strand, within HP15_331 at 329.225 kb on + strand, within HP15_331 at 329.242 kb on - strand, within HP15_331 at 329.246 kb on + strand, within HP15_331 at 329.254 kb on - strand, within HP15_331 at 329.354 kb on - strand, within HP15_331 at 329.414 kb on + strand, within HP15_331 at 329.449 kb on + strand, within HP15_331 at 329.552 kb on - strand, within HP15_331 at 329.562 kb on + strand, within HP15_331
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 325,142 - HP15_328 0.65 +0.2 325,777 - -1.3 325,841 - -1.3 326,478 + HP15_329 0.28 -1.3 326,806 + HP15_329 0.39 +0.6 326,932 - HP15_329 0.43 -0.7 326,932 - HP15_329 0.43 -0.3 326,932 - HP15_329 0.43 +0.5 327,103 + HP15_329 0.49 -1.4 327,111 - HP15_329 0.49 +0.1 327,624 + HP15_329 0.67 -1.3 327,784 - HP15_329 0.72 +0.2 328,094 - HP15_329 0.83 -0.2 328,341 - -1.6 328,525 - -0.2 328,668 - HP15_330 0.40 -0.1 328,679 - HP15_330 0.46 -0.4 328,808 + -0.6 328,808 + -0.9 328,808 + +0.3 328,816 - +0.0 328,816 - +0.3 329,001 - HP15_331 0.20 +0.3 329,099 + HP15_331 0.31 +0.4 329,112 - HP15_331 0.33 +1.1 329,120 - HP15_331 0.34 +0.3 329,120 - HP15_331 0.34 -0.8 329,131 - HP15_331 0.35 +0.3 329,180 + HP15_331 0.41 -0.1 329,188 - HP15_331 0.42 +0.9 329,188 - HP15_331 0.42 -0.8 329,193 - HP15_331 0.42 -0.1 329,223 - HP15_331 0.46 -0.1 329,225 + HP15_331 0.46 +0.3 329,242 - HP15_331 0.48 -0.4 329,246 + HP15_331 0.48 -0.1 329,254 - HP15_331 0.49 +0.0 329,354 - HP15_331 0.61 +0.0 329,414 + HP15_331 0.67 +0.6 329,449 + HP15_331 0.71 +0.7 329,552 - HP15_331 0.83 -0.9 329,562 + HP15_331 0.84 -0.0
Or see this region's nucleotide sequence