Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2994 and HP15_2995 are separated by 9 nucleotides HP15_2995 and HP15_2996 are separated by 107 nucleotides
HP15_2994: HP15_2994 - polynucleotide adenylyltransferase/metal dependent phosphohydrolase, at 3,137,372 to 3,138,493
_2994
HP15_2995: HP15_2995 - short-chain dehydrogenase/reductase SDR, at 3,138,503 to 3,139,249
_2995
HP15_2996: HP15_2996 - acetyl-CoA acetyltransferase, at 3,139,357 to 3,140,553
_2996
Position (kb)
3138
3139
3140 Strain fitness (log2 ratio)
-2
-1
0
1 at 3138.487 kb on + strand at 3138.495 kb on - strand at 3138.573 kb on - strand at 3138.587 kb on + strand, within HP15_2995 at 3138.676 kb on - strand, within HP15_2995 at 3138.745 kb on - strand, within HP15_2995 at 3138.789 kb on + strand, within HP15_2995 at 3138.967 kb on - strand, within HP15_2995 at 3139.052 kb on - strand, within HP15_2995 at 3139.056 kb on + strand, within HP15_2995 at 3139.127 kb on + strand, within HP15_2995 at 3139.183 kb on - strand at 3139.230 kb on + strand at 3139.404 kb on + strand at 3139.458 kb on + strand at 3139.474 kb on - strand at 3139.657 kb on + strand, within HP15_2996 at 3139.714 kb on + strand, within HP15_2996 at 3139.826 kb on + strand, within HP15_2996 at 3139.980 kb on - strand, within HP15_2996 at 3139.992 kb on + strand, within HP15_2996 at 3139.992 kb on + strand, within HP15_2996 at 3140.050 kb on + strand, within HP15_2996 at 3140.058 kb on - strand, within HP15_2996 at 3140.156 kb on - strand, within HP15_2996
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 3,138,487 + +0.6 3,138,495 - -0.5 3,138,573 - -0.1 3,138,587 + HP15_2995 0.11 -1.4 3,138,676 - HP15_2995 0.23 -0.1 3,138,745 - HP15_2995 0.32 -0.8 3,138,789 + HP15_2995 0.38 -0.6 3,138,967 - HP15_2995 0.62 -0.6 3,139,052 - HP15_2995 0.73 -0.6 3,139,056 + HP15_2995 0.74 +0.1 3,139,127 + HP15_2995 0.84 -0.4 3,139,183 - -0.3 3,139,230 + +0.5 3,139,404 + -0.9 3,139,458 + -0.4 3,139,474 - -0.9 3,139,657 + HP15_2996 0.25 -0.6 3,139,714 + HP15_2996 0.30 +1.1 3,139,826 + HP15_2996 0.39 -0.1 3,139,980 - HP15_2996 0.52 -0.2 3,139,992 + HP15_2996 0.53 -0.1 3,139,992 + HP15_2996 0.53 -2.5 3,140,050 + HP15_2996 0.58 -0.3 3,140,058 - HP15_2996 0.59 +0.4 3,140,156 - HP15_2996 0.67 -0.8
Or see this region's nucleotide sequence