Experiment: m.b. Phosphomycin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c30560 and PGA1_c30570 are separated by 77 nucleotides PGA1_c30570 and PGA1_c30580 are separated by 100 nucleotides PGA1_c30580 and PGA1_c30590 are separated by 175 nucleotides PGA1_c30590 and PGA1_c30600 are separated by 364 nucleotides
PGA1_c30560: PGA1_c30560 - HTH-type transcriptional regulator, GntR family, at 3,190,597 to 3,191,265
_c30560
PGA1_c30570: PGA1_c30570 - Predicted metal-dependent hydrolase, at 3,191,343 to 3,192,035
_c30570
PGA1_c30580: PGA1_c30580 - TIGR02300 family protein, at 3,192,136 to 3,192,462
_c30580
PGA1_c30590: PGA1_c30590 - tRNA-Ala, at 3,192,638 to 3,192,713
_c30590
PGA1_c30600: PGA1_c30600 - RTX toxins and related Ca2+-binding proteins, at 3,193,078 to 3,195,957
_c30600
Position (kb)
3192
3193 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3191.200 kb on + strand at 3191.295 kb on + strand at 3191.318 kb on + strand at 3191.501 kb on + strand, within PGA1_c30570 at 3191.501 kb on + strand, within PGA1_c30570 at 3191.509 kb on - strand, within PGA1_c30570 at 3191.630 kb on + strand, within PGA1_c30570 at 3191.808 kb on + strand, within PGA1_c30570 at 3191.816 kb on - strand, within PGA1_c30570 at 3191.816 kb on - strand, within PGA1_c30570 at 3191.816 kb on - strand, within PGA1_c30570 at 3191.816 kb on - strand, within PGA1_c30570 at 3191.821 kb on + strand, within PGA1_c30570 at 3191.980 kb on + strand at 3191.980 kb on + strand at 3191.988 kb on - strand at 3192.058 kb on + strand at 3192.058 kb on + strand at 3192.058 kb on + strand at 3192.060 kb on - strand at 3192.337 kb on + strand, within PGA1_c30580 at 3192.345 kb on - strand, within PGA1_c30580 at 3192.464 kb on - strand at 3192.497 kb on + strand at 3192.588 kb on + strand at 3192.869 kb on - strand at 3192.889 kb on + strand at 3192.923 kb on + strand at 3192.928 kb on + strand at 3192.938 kb on + strand at 3192.946 kb on - strand at 3192.946 kb on - strand at 3193.006 kb on + strand at 3193.013 kb on - strand at 3193.014 kb on - strand at 3193.041 kb on - strand at 3193.041 kb on - strand at 3193.046 kb on - strand at 3193.047 kb on - strand at 3193.047 kb on - strand at 3193.049 kb on - strand at 3193.073 kb on + strand at 3193.082 kb on - strand at 3193.082 kb on - strand at 3193.131 kb on + strand at 3193.151 kb on + strand at 3193.152 kb on + strand at 3193.152 kb on + strand at 3193.160 kb on - strand at 3193.160 kb on - strand at 3193.160 kb on - strand at 3193.186 kb on + strand at 3193.212 kb on - strand at 3193.242 kb on - strand at 3193.250 kb on - strand at 3193.274 kb on + strand at 3193.274 kb on + strand at 3193.274 kb on + strand at 3193.274 kb on + strand at 3193.274 kb on + strand at 3193.277 kb on - strand at 3193.282 kb on - strand at 3193.282 kb on - strand at 3193.282 kb on - strand at 3193.282 kb on - strand at 3193.282 kb on - strand at 3193.282 kb on - strand at 3193.282 kb on - strand at 3193.282 kb on - strand at 3193.285 kb on + strand at 3193.288 kb on + strand at 3193.288 kb on + strand at 3193.288 kb on + strand at 3193.288 kb on + strand at 3193.295 kb on + strand at 3193.296 kb on - strand at 3193.296 kb on - strand at 3193.296 kb on - strand at 3193.300 kb on + strand at 3193.300 kb on + strand at 3193.300 kb on + strand at 3193.300 kb on + strand at 3193.300 kb on + strand at 3193.300 kb on + strand at 3193.300 kb on + strand at 3193.303 kb on - strand at 3193.308 kb on - strand at 3193.308 kb on - strand at 3193.308 kb on - strand at 3193.308 kb on - strand at 3193.308 kb on - strand at 3193.331 kb on + strand at 3193.331 kb on + strand at 3193.345 kb on - strand at 3193.356 kb on - strand at 3193.375 kb on + strand, within PGA1_c30600 at 3193.375 kb on + strand, within PGA1_c30600 at 3193.375 kb on + strand, within PGA1_c30600 at 3193.375 kb on + strand, within PGA1_c30600 at 3193.375 kb on - strand, within PGA1_c30600 at 3193.383 kb on - strand, within PGA1_c30600 at 3193.383 kb on - strand, within PGA1_c30600 at 3193.383 kb on - strand, within PGA1_c30600 at 3193.394 kb on + strand, within PGA1_c30600 at 3193.394 kb on + strand, within PGA1_c30600 at 3193.394 kb on + strand, within PGA1_c30600 at 3193.394 kb on + strand, within PGA1_c30600 at 3193.402 kb on - strand, within PGA1_c30600 at 3193.404 kb on - strand, within PGA1_c30600
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml remove 3,191,200 + +2.1 3,191,295 + +0.3 3,191,318 + +1.2 3,191,501 + PGA1_c30570 0.23 -1.8 3,191,501 + PGA1_c30570 0.23 -1.3 3,191,509 - PGA1_c30570 0.24 +0.2 3,191,630 + PGA1_c30570 0.41 +1.1 3,191,808 + PGA1_c30570 0.67 -1.3 3,191,816 - PGA1_c30570 0.68 -0.4 3,191,816 - PGA1_c30570 0.68 -1.6 3,191,816 - PGA1_c30570 0.68 +0.3 3,191,816 - PGA1_c30570 0.68 -0.8 3,191,821 + PGA1_c30570 0.69 +0.2 3,191,980 + -1.1 3,191,980 + -0.3 3,191,988 - -0.0 3,192,058 + -2.1 3,192,058 + +0.2 3,192,058 + +0.6 3,192,060 - -1.3 3,192,337 + PGA1_c30580 0.61 +2.0 3,192,345 - PGA1_c30580 0.64 +1.7 3,192,464 - +1.8 3,192,497 + +1.3 3,192,588 + +1.0 3,192,869 - +0.2 3,192,889 + -0.3 3,192,923 + -1.3 3,192,928 + -0.3 3,192,938 + -2.4 3,192,946 - +0.9 3,192,946 - +0.2 3,193,006 + +1.3 3,193,013 - +1.0 3,193,014 - +0.2 3,193,041 - -0.3 3,193,041 - +1.0 3,193,046 - +2.1 3,193,047 - -1.2 3,193,047 - +0.7 3,193,049 - +0.7 3,193,073 + -0.8 3,193,082 - +0.5 3,193,082 - -0.6 3,193,131 + -0.3 3,193,151 + -1.2 3,193,152 + -0.2 3,193,152 + +0.5 3,193,160 - +0.7 3,193,160 - -1.6 3,193,160 - -2.0 3,193,186 + +0.1 3,193,212 - +1.1 3,193,242 - -0.3 3,193,250 - +0.4 3,193,274 + +1.0 3,193,274 + +0.7 3,193,274 + +1.3 3,193,274 + -0.6 3,193,274 + +0.9 3,193,277 - -0.7 3,193,282 - +0.1 3,193,282 - +0.2 3,193,282 - -0.4 3,193,282 - +0.6 3,193,282 - -0.3 3,193,282 - -1.0 3,193,282 - -0.1 3,193,282 - -0.3 3,193,285 + -0.1 3,193,288 + +0.3 3,193,288 + +1.1 3,193,288 + +0.0 3,193,288 + +0.7 3,193,295 + -0.1 3,193,296 - +0.7 3,193,296 - -0.4 3,193,296 - -0.3 3,193,300 + +0.0 3,193,300 + -0.3 3,193,300 + +0.7 3,193,300 + -0.3 3,193,300 + +0.4 3,193,300 + +0.4 3,193,300 + -1.4 3,193,303 - +1.5 3,193,308 - -0.3 3,193,308 - +0.3 3,193,308 - -0.1 3,193,308 - -0.4 3,193,308 - -0.5 3,193,331 + +2.0 3,193,331 + -0.4 3,193,345 - +0.9 3,193,356 - +0.9 3,193,375 + PGA1_c30600 0.10 +0.5 3,193,375 + PGA1_c30600 0.10 -0.3 3,193,375 + PGA1_c30600 0.10 +2.3 3,193,375 + PGA1_c30600 0.10 +1.1 3,193,375 - PGA1_c30600 0.10 -0.5 3,193,383 - PGA1_c30600 0.11 +0.9 3,193,383 - PGA1_c30600 0.11 -0.1 3,193,383 - PGA1_c30600 0.11 -0.1 3,193,394 + PGA1_c30600 0.11 +0.7 3,193,394 + PGA1_c30600 0.11 -1.1 3,193,394 + PGA1_c30600 0.11 +0.1 3,193,394 + PGA1_c30600 0.11 -1.7 3,193,402 - PGA1_c30600 0.11 +0.6 3,193,404 - PGA1_c30600 0.11 +0.1
Or see this region's nucleotide sequence