Experiment: m.b. Phosphomycin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c29970 and PGA1_c29980 are separated by 37 nucleotides PGA1_c29980 and PGA1_c29990 are separated by 106 nucleotides
PGA1_c29970: PGA1_c29970 - coproporphyrinogen 3 oxidase, aerobic, at 3,134,059 to 3,134,952
_c29970
PGA1_c29980: PGA1_c29980 - putative short chain dehydrogenase, at 3,134,990 to 3,135,793
_c29980
PGA1_c29990: PGA1_c29990 - methyltransferase, at 3,135,900 to 3,136,892
_c29990
Position (kb)
3134
3135
3136 Strain fitness (log2 ratio)
-1
0
1
2 at 3134.034 kb on - strand at 3134.041 kb on + strand at 3134.049 kb on - strand at 3134.945 kb on + strand at 3134.945 kb on + strand at 3134.945 kb on + strand at 3134.945 kb on + strand at 3134.953 kb on - strand at 3134.953 kb on - strand at 3135.012 kb on - strand at 3135.012 kb on - strand at 3135.914 kb on + strand at 3135.963 kb on + strand at 3135.971 kb on - strand at 3136.018 kb on - strand, within PGA1_c29990 at 3136.064 kb on - strand, within PGA1_c29990 at 3136.071 kb on + strand, within PGA1_c29990 at 3136.110 kb on + strand, within PGA1_c29990 at 3136.121 kb on - strand, within PGA1_c29990 at 3136.146 kb on - strand, within PGA1_c29990 at 3136.190 kb on - strand, within PGA1_c29990 at 3136.285 kb on + strand, within PGA1_c29990 at 3136.288 kb on + strand, within PGA1_c29990 at 3136.310 kb on - strand, within PGA1_c29990 at 3136.310 kb on - strand, within PGA1_c29990 at 3136.414 kb on + strand, within PGA1_c29990 at 3136.449 kb on - strand, within PGA1_c29990 at 3136.449 kb on - strand, within PGA1_c29990 at 3136.449 kb on - strand, within PGA1_c29990 at 3136.464 kb on - strand, within PGA1_c29990 at 3136.471 kb on - strand, within PGA1_c29990 at 3136.471 kb on - strand, within PGA1_c29990 at 3136.505 kb on + strand, within PGA1_c29990 at 3136.505 kb on - strand, within PGA1_c29990 at 3136.600 kb on - strand, within PGA1_c29990 at 3136.603 kb on + strand, within PGA1_c29990 at 3136.608 kb on + strand, within PGA1_c29990 at 3136.662 kb on + strand, within PGA1_c29990 at 3136.738 kb on + strand, within PGA1_c29990 at 3136.764 kb on + strand, within PGA1_c29990
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml remove 3,134,034 - -1.0 3,134,041 + -0.0 3,134,049 - -1.0 3,134,945 + +0.7 3,134,945 + -0.0 3,134,945 + +1.1 3,134,945 + -0.3 3,134,953 - -0.6 3,134,953 - +0.9 3,135,012 - +0.6 3,135,012 - -0.7 3,135,914 + +2.2 3,135,963 + +0.7 3,135,971 - -0.6 3,136,018 - PGA1_c29990 0.12 -0.2 3,136,064 - PGA1_c29990 0.17 +0.4 3,136,071 + PGA1_c29990 0.17 +0.4 3,136,110 + PGA1_c29990 0.21 -0.0 3,136,121 - PGA1_c29990 0.22 +0.7 3,136,146 - PGA1_c29990 0.25 +0.0 3,136,190 - PGA1_c29990 0.29 -1.1 3,136,285 + PGA1_c29990 0.39 +0.2 3,136,288 + PGA1_c29990 0.39 -1.5 3,136,310 - PGA1_c29990 0.41 +0.6 3,136,310 - PGA1_c29990 0.41 +0.0 3,136,414 + PGA1_c29990 0.52 +1.2 3,136,449 - PGA1_c29990 0.55 +0.1 3,136,449 - PGA1_c29990 0.55 +0.2 3,136,449 - PGA1_c29990 0.55 -0.1 3,136,464 - PGA1_c29990 0.57 +0.2 3,136,471 - PGA1_c29990 0.58 +1.5 3,136,471 - PGA1_c29990 0.58 -0.7 3,136,505 + PGA1_c29990 0.61 -0.3 3,136,505 - PGA1_c29990 0.61 +0.1 3,136,600 - PGA1_c29990 0.70 +0.7 3,136,603 + PGA1_c29990 0.71 -1.3 3,136,608 + PGA1_c29990 0.71 -0.2 3,136,662 + PGA1_c29990 0.77 +0.4 3,136,738 + PGA1_c29990 0.84 -1.1 3,136,764 + PGA1_c29990 0.87 +0.7
Or see this region's nucleotide sequence