Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2867 and HP15_2868 are separated by 71 nucleotides HP15_2868 and HP15_2869 are separated by 192 nucleotides HP15_2869 and HP15_2870 are separated by 43 nucleotides
HP15_2867: HP15_2867 - HypX, at 3,004,901 to 3,006,841
_2867
HP15_2868: HP15_2868 - hypothetical protein, at 3,006,913 to 3,007,047
_2868
HP15_2869: HP15_2869 - HupE/UreJ protein, at 3,007,240 to 3,007,815
_2869
HP15_2870: HP15_2870 - urease accessory protein ureG-like protein, at 3,007,859 to 3,008,473
_2870
Position (kb)
3006
3007
3008 Strain fitness (log2 ratio)
-1
0
1
2 at 3006.035 kb on + strand, within HP15_2867 at 3006.439 kb on + strand, within HP15_2867 at 3006.528 kb on + strand, within HP15_2867 at 3006.544 kb on + strand, within HP15_2867 at 3006.656 kb on - strand at 3006.671 kb on - strand at 3006.689 kb on - strand at 3006.753 kb on + strand at 3006.753 kb on + strand at 3006.761 kb on - strand at 3006.847 kb on + strand at 3006.847 kb on + strand at 3006.855 kb on - strand at 3006.946 kb on - strand, within HP15_2868 at 3006.982 kb on + strand, within HP15_2868 at 3007.005 kb on - strand, within HP15_2868 at 3007.034 kb on + strand at 3007.085 kb on + strand at 3007.099 kb on - strand at 3007.157 kb on + strand at 3007.367 kb on + strand, within HP15_2869 at 3007.383 kb on + strand, within HP15_2869 at 3007.425 kb on + strand, within HP15_2869 at 3007.433 kb on + strand, within HP15_2869 at 3007.468 kb on + strand, within HP15_2869 at 3007.550 kb on - strand, within HP15_2869 at 3007.565 kb on - strand, within HP15_2869 at 3007.565 kb on - strand, within HP15_2869 at 3007.565 kb on - strand, within HP15_2869 at 3007.627 kb on + strand, within HP15_2869 at 3007.652 kb on + strand, within HP15_2869 at 3007.750 kb on + strand, within HP15_2869 at 3007.772 kb on + strand at 3007.787 kb on - strand at 3007.797 kb on - strand at 3007.797 kb on - strand at 3007.866 kb on + strand at 3007.909 kb on + strand at 3007.920 kb on + strand at 3007.939 kb on + strand, within HP15_2870 at 3007.973 kb on + strand, within HP15_2870
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 3,006,035 + HP15_2867 0.58 -1.1 3,006,439 + HP15_2867 0.79 -0.2 3,006,528 + HP15_2867 0.84 -0.8 3,006,544 + HP15_2867 0.85 +0.1 3,006,656 - -0.7 3,006,671 - -0.0 3,006,689 - -1.4 3,006,753 + -1.2 3,006,753 + -0.1 3,006,761 - -0.4 3,006,847 + +0.4 3,006,847 + +0.0 3,006,855 - +1.5 3,006,946 - HP15_2868 0.24 +0.8 3,006,982 + HP15_2868 0.51 +1.5 3,007,005 - HP15_2868 0.68 +0.5 3,007,034 + -0.9 3,007,085 + +0.2 3,007,099 - +0.8 3,007,157 + +0.4 3,007,367 + HP15_2869 0.22 -0.2 3,007,383 + HP15_2869 0.25 +0.2 3,007,425 + HP15_2869 0.32 -0.2 3,007,433 + HP15_2869 0.34 +0.1 3,007,468 + HP15_2869 0.40 +0.4 3,007,550 - HP15_2869 0.54 +0.6 3,007,565 - HP15_2869 0.56 +0.4 3,007,565 - HP15_2869 0.56 +0.0 3,007,565 - HP15_2869 0.56 +0.2 3,007,627 + HP15_2869 0.67 -0.7 3,007,652 + HP15_2869 0.72 +0.2 3,007,750 + HP15_2869 0.89 +0.1 3,007,772 + -0.8 3,007,787 - +0.3 3,007,797 - +2.1 3,007,797 - +0.2 3,007,866 + -1.4 3,007,909 + -0.8 3,007,920 + +1.0 3,007,939 + HP15_2870 0.13 +0.1 3,007,973 + HP15_2870 0.19 +0.1
Or see this region's nucleotide sequence