Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_247 and HP15_248 are separated by 14 nucleotides HP15_248 and HP15_249 are separated by 16 nucleotides HP15_249 and HP15_250 are separated by 28 nucleotides
HP15_247: HP15_247 - diaminopimelate decarboxylase, at 235,559 to 236,809
_247
HP15_248: HP15_248 - diaminopimelate epimerase, at 236,824 to 237,738
_248
HP15_249: HP15_249 - protein containing DUF484, at 237,755 to 238,501
_249
HP15_250: HP15_250 - site-specific tyrosine recombinase XerC, at 238,530 to 239,462
_250
Position (kb) 237
238
239 Strain fitness (log2 ratio) -2
-1
0
1 at 237.667 kb on + strand at 237.677 kb on - strand at 237.748 kb on - strand at 237.751 kb on + strand at 237.875 kb on - strand, within HP15_249 at 237.935 kb on - strand, within HP15_249 at 237.942 kb on + strand, within HP15_249 at 238.020 kb on - strand, within HP15_249 at 238.153 kb on + strand, within HP15_249 at 238.177 kb on - strand, within HP15_249 at 238.222 kb on + strand, within HP15_249 at 238.381 kb on + strand, within HP15_249 at 238.520 kb on - strand at 238.530 kb on - strand at 238.929 kb on - strand, within HP15_250 at 239.026 kb on - strand, within HP15_250 at 239.031 kb on - strand, within HP15_250 at 239.031 kb on - strand, within HP15_250 at 239.102 kb on + strand, within HP15_250 at 239.112 kb on - strand, within HP15_250 at 239.193 kb on + strand, within HP15_250 at 239.330 kb on - strand, within HP15_250 at 239.330 kb on - strand, within HP15_250 at 239.354 kb on + strand, within HP15_250 at 239.362 kb on - strand, within HP15_250
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 237,667 + -0.3 237,677 - -0.1 237,748 - +0.0 237,751 + -1.0 237,875 - HP15_249 0.16 -0.5 237,935 - HP15_249 0.24 -0.8 237,942 + HP15_249 0.25 -0.8 238,020 - HP15_249 0.35 -1.0 238,153 + HP15_249 0.53 +0.3 238,177 - HP15_249 0.56 -0.1 238,222 + HP15_249 0.63 -1.3 238,381 + HP15_249 0.84 +0.3 238,520 - +0.5 238,530 - -0.4 238,929 - HP15_250 0.43 -0.3 239,026 - HP15_250 0.53 -1.3 239,031 - HP15_250 0.54 -0.3 239,031 - HP15_250 0.54 -1.7 239,102 + HP15_250 0.61 -1.3 239,112 - HP15_250 0.62 -0.3 239,193 + HP15_250 0.71 -1.3 239,330 - HP15_250 0.86 -0.3 239,330 - HP15_250 0.86 +1.1 239,354 + HP15_250 0.88 -1.0 239,362 - HP15_250 0.89 -1.8
Or see this region's nucleotide sequence