Experiment: m.b. Phosphomycin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24210 and PGA1_c24220 are separated by 104 nucleotides PGA1_c24220 and PGA1_c24230 are separated by 110 nucleotides
PGA1_c24210: PGA1_c24210 - putative phosphate transporter, at 2,525,591 to 2,527,072
_c24210
PGA1_c24220: PGA1_c24220 - ornithine carbamoyltransferase ArgF, at 2,527,177 to 2,528,103
_c24220
PGA1_c24230: PGA1_c24230 - acetylornithine aminotransferase ArgD, at 2,528,214 to 2,529,398
_c24230
Position (kb)
2527
2528
2529 Strain fitness (log2 ratio)
-1
0
1
2 at 2526.341 kb on - strand, within PGA1_c24210 at 2526.361 kb on - strand, within PGA1_c24210 at 2526.402 kb on + strand, within PGA1_c24210 at 2526.402 kb on - strand, within PGA1_c24210 at 2526.405 kb on - strand, within PGA1_c24210 at 2526.429 kb on - strand, within PGA1_c24210 at 2526.445 kb on + strand, within PGA1_c24210 at 2526.445 kb on + strand, within PGA1_c24210 at 2526.465 kb on - strand, within PGA1_c24210 at 2526.502 kb on - strand, within PGA1_c24210 at 2526.507 kb on - strand, within PGA1_c24210 at 2526.527 kb on - strand, within PGA1_c24210 at 2526.560 kb on - strand, within PGA1_c24210 at 2526.562 kb on + strand, within PGA1_c24210 at 2526.629 kb on - strand, within PGA1_c24210 at 2526.645 kb on + strand, within PGA1_c24210 at 2526.685 kb on + strand, within PGA1_c24210 at 2526.742 kb on + strand, within PGA1_c24210 at 2526.744 kb on - strand, within PGA1_c24210 at 2526.801 kb on + strand, within PGA1_c24210 at 2526.809 kb on - strand, within PGA1_c24210 at 2526.809 kb on - strand, within PGA1_c24210 at 2526.865 kb on - strand, within PGA1_c24210 at 2526.865 kb on - strand, within PGA1_c24210 at 2526.911 kb on - strand, within PGA1_c24210 at 2526.921 kb on - strand, within PGA1_c24210 at 2527.025 kb on - strand at 2527.042 kb on - strand at 2527.091 kb on + strand at 2527.165 kb on + strand at 2527.170 kb on + strand at 2527.400 kb on - strand, within PGA1_c24220 at 2527.561 kb on - strand, within PGA1_c24220 at 2527.662 kb on + strand, within PGA1_c24220 at 2527.670 kb on - strand, within PGA1_c24220 at 2527.845 kb on - strand, within PGA1_c24220 at 2528.008 kb on - strand, within PGA1_c24220 at 2528.008 kb on - strand, within PGA1_c24220 at 2528.025 kb on + strand at 2528.043 kb on + strand at 2528.069 kb on - strand at 2528.224 kb on + strand at 2528.242 kb on - strand at 2528.250 kb on - strand at 2528.303 kb on - strand at 2528.409 kb on + strand, within PGA1_c24230 at 2528.414 kb on + strand, within PGA1_c24230 at 2528.414 kb on + strand, within PGA1_c24230 at 2528.417 kb on - strand, within PGA1_c24230 at 2528.422 kb on - strand, within PGA1_c24230 at 2528.422 kb on - strand, within PGA1_c24230 at 2528.422 kb on - strand, within PGA1_c24230 at 2528.422 kb on - strand, within PGA1_c24230 at 2528.427 kb on - strand, within PGA1_c24230 at 2528.457 kb on + strand, within PGA1_c24230 at 2528.553 kb on - strand, within PGA1_c24230 at 2528.558 kb on - strand, within PGA1_c24230 at 2528.560 kb on - strand, within PGA1_c24230 at 2528.570 kb on - strand, within PGA1_c24230 at 2528.570 kb on - strand, within PGA1_c24230 at 2528.570 kb on - strand, within PGA1_c24230 at 2528.570 kb on - strand, within PGA1_c24230 at 2528.596 kb on - strand, within PGA1_c24230 at 2528.609 kb on + strand, within PGA1_c24230 at 2528.740 kb on + strand, within PGA1_c24230 at 2528.793 kb on - strand, within PGA1_c24230 at 2528.803 kb on + strand, within PGA1_c24230 at 2528.902 kb on - strand, within PGA1_c24230 at 2528.902 kb on - strand, within PGA1_c24230 at 2528.902 kb on - strand, within PGA1_c24230 at 2528.919 kb on + strand, within PGA1_c24230 at 2528.984 kb on + strand, within PGA1_c24230 at 2529.057 kb on - strand, within PGA1_c24230
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml remove 2,526,341 - PGA1_c24210 0.51 -0.1 2,526,361 - PGA1_c24210 0.52 +1.1 2,526,402 + PGA1_c24210 0.55 +0.3 2,526,402 - PGA1_c24210 0.55 +1.0 2,526,405 - PGA1_c24210 0.55 +1.2 2,526,429 - PGA1_c24210 0.57 +0.6 2,526,445 + PGA1_c24210 0.58 +0.6 2,526,445 + PGA1_c24210 0.58 +0.6 2,526,465 - PGA1_c24210 0.59 +0.7 2,526,502 - PGA1_c24210 0.61 -0.2 2,526,507 - PGA1_c24210 0.62 +0.6 2,526,527 - PGA1_c24210 0.63 -0.8 2,526,560 - PGA1_c24210 0.65 +0.0 2,526,562 + PGA1_c24210 0.66 -0.3 2,526,629 - PGA1_c24210 0.70 +0.0 2,526,645 + PGA1_c24210 0.71 +0.6 2,526,685 + PGA1_c24210 0.74 +0.2 2,526,742 + PGA1_c24210 0.78 +1.5 2,526,744 - PGA1_c24210 0.78 +0.2 2,526,801 + PGA1_c24210 0.82 -0.6 2,526,809 - PGA1_c24210 0.82 +1.1 2,526,809 - PGA1_c24210 0.82 +0.7 2,526,865 - PGA1_c24210 0.86 -1.3 2,526,865 - PGA1_c24210 0.86 +1.2 2,526,911 - PGA1_c24210 0.89 -0.0 2,526,921 - PGA1_c24210 0.90 +0.6 2,527,025 - +0.8 2,527,042 - +0.4 2,527,091 + -0.2 2,527,165 + +1.7 2,527,170 + -1.2 2,527,400 - PGA1_c24220 0.24 +1.1 2,527,561 - PGA1_c24220 0.41 -0.7 2,527,662 + PGA1_c24220 0.52 +0.6 2,527,670 - PGA1_c24220 0.53 +0.8 2,527,845 - PGA1_c24220 0.72 +0.2 2,528,008 - PGA1_c24220 0.90 +0.6 2,528,008 - PGA1_c24220 0.90 +0.6 2,528,025 + -0.1 2,528,043 + +0.6 2,528,069 - +1.9 2,528,224 + -0.1 2,528,242 - -0.1 2,528,250 - +0.3 2,528,303 - +1.2 2,528,409 + PGA1_c24230 0.16 +0.6 2,528,414 + PGA1_c24230 0.17 -1.4 2,528,414 + PGA1_c24230 0.17 -0.4 2,528,417 - PGA1_c24230 0.17 -1.0 2,528,422 - PGA1_c24230 0.18 +0.1 2,528,422 - PGA1_c24230 0.18 +0.3 2,528,422 - PGA1_c24230 0.18 -0.7 2,528,422 - PGA1_c24230 0.18 +1.4 2,528,427 - PGA1_c24230 0.18 +1.0 2,528,457 + PGA1_c24230 0.21 -1.5 2,528,553 - PGA1_c24230 0.29 -0.4 2,528,558 - PGA1_c24230 0.29 -1.4 2,528,560 - PGA1_c24230 0.29 -1.4 2,528,570 - PGA1_c24230 0.30 +1.6 2,528,570 - PGA1_c24230 0.30 -1.2 2,528,570 - PGA1_c24230 0.30 +1.6 2,528,570 - PGA1_c24230 0.30 +0.0 2,528,596 - PGA1_c24230 0.32 +1.3 2,528,609 + PGA1_c24230 0.33 +0.9 2,528,740 + PGA1_c24230 0.44 +1.1 2,528,793 - PGA1_c24230 0.49 +0.5 2,528,803 + PGA1_c24230 0.50 -0.2 2,528,902 - PGA1_c24230 0.58 -1.0 2,528,902 - PGA1_c24230 0.58 -0.6 2,528,902 - PGA1_c24230 0.58 -0.2 2,528,919 + PGA1_c24230 0.59 +0.8 2,528,984 + PGA1_c24230 0.65 +1.3 2,529,057 - PGA1_c24230 0.71 +0.0
Or see this region's nucleotide sequence