Experiment: m.b. Phosphomycin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c20270 and PGA1_c20280 are separated by 178 nucleotides PGA1_c20280 and PGA1_c20290 are separated by 224 nucleotides
PGA1_c20270: PGA1_c20270 - peptide chain release factor 2, at 2,103,454 to 2,104,578
_c20270
PGA1_c20280: PGA1_c20280 - penicillin-binding protein 1A MrcA, at 2,104,757 to 2,107,258
_c20280
PGA1_c20290: PGA1_c20290 - putative N-acetylmuramoyl-L-alanine amidase AmiC, at 2,107,483 to 2,108,793
_c20290
Position (kb)
2104
2105
2106
2107
2108 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2104.688 kb on + strand at 2104.702 kb on + strand at 2104.726 kb on + strand at 2104.753 kb on - strand at 2104.984 kb on + strand at 2104.992 kb on + strand at 2105.025 kb on + strand, within PGA1_c20280 at 2105.033 kb on - strand, within PGA1_c20280 at 2105.279 kb on + strand, within PGA1_c20280 at 2105.304 kb on - strand, within PGA1_c20280 at 2105.400 kb on + strand, within PGA1_c20280 at 2105.525 kb on - strand, within PGA1_c20280 at 2106.459 kb on + strand, within PGA1_c20280 at 2106.617 kb on - strand, within PGA1_c20280 at 2106.831 kb on + strand, within PGA1_c20280 at 2106.953 kb on + strand, within PGA1_c20280 at 2107.084 kb on + strand at 2107.215 kb on + strand at 2107.248 kb on + strand at 2107.258 kb on + strand at 2107.258 kb on + strand at 2107.258 kb on + strand at 2107.258 kb on + strand at 2107.258 kb on + strand at 2107.258 kb on + strand at 2107.258 kb on + strand at 2107.258 kb on + strand at 2107.258 kb on + strand at 2107.258 kb on + strand at 2107.266 kb on - strand at 2107.266 kb on - strand at 2107.266 kb on - strand at 2107.266 kb on - strand at 2107.266 kb on - strand at 2107.266 kb on - strand at 2107.266 kb on - strand at 2107.266 kb on - strand at 2107.266 kb on - strand at 2107.266 kb on - strand at 2107.266 kb on - strand at 2107.266 kb on - strand at 2107.266 kb on - strand at 2107.266 kb on - strand at 2107.266 kb on - strand at 2107.266 kb on - strand at 2107.268 kb on - strand at 2107.302 kb on - strand at 2107.302 kb on - strand at 2107.302 kb on - strand at 2107.334 kb on - strand at 2107.402 kb on - strand at 2107.458 kb on - strand at 2107.505 kb on - strand at 2107.523 kb on + strand at 2107.557 kb on - strand at 2107.596 kb on + strand at 2107.596 kb on + strand at 2107.821 kb on + strand, within PGA1_c20290 at 2107.892 kb on + strand, within PGA1_c20290 at 2107.911 kb on - strand, within PGA1_c20290 at 2107.981 kb on - strand, within PGA1_c20290 at 2107.981 kb on - strand, within PGA1_c20290 at 2108.041 kb on - strand, within PGA1_c20290 at 2108.045 kb on + strand, within PGA1_c20290 at 2108.053 kb on - strand, within PGA1_c20290 at 2108.053 kb on - strand, within PGA1_c20290 at 2108.214 kb on - strand, within PGA1_c20290
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml remove 2,104,688 + +0.0 2,104,702 + -0.8 2,104,726 + +1.1 2,104,753 - -0.0 2,104,984 + +3.7 2,104,992 + +1.8 2,105,025 + PGA1_c20280 0.11 +0.5 2,105,033 - PGA1_c20280 0.11 +2.2 2,105,279 + PGA1_c20280 0.21 +2.3 2,105,304 - PGA1_c20280 0.22 +2.3 2,105,400 + PGA1_c20280 0.26 +1.3 2,105,525 - PGA1_c20280 0.31 +3.1 2,106,459 + PGA1_c20280 0.68 -0.8 2,106,617 - PGA1_c20280 0.74 +4.1 2,106,831 + PGA1_c20280 0.83 +2.6 2,106,953 + PGA1_c20280 0.88 +1.0 2,107,084 + +2.8 2,107,215 + +0.7 2,107,248 + +4.0 2,107,258 + +1.4 2,107,258 + +0.5 2,107,258 + +2.2 2,107,258 + +2.3 2,107,258 + +1.5 2,107,258 + +1.3 2,107,258 + +1.4 2,107,258 + +1.8 2,107,258 + +2.3 2,107,258 + +1.3 2,107,266 - -0.7 2,107,266 - +0.8 2,107,266 - +0.9 2,107,266 - +0.3 2,107,266 - +0.5 2,107,266 - +1.0 2,107,266 - +0.4 2,107,266 - -0.0 2,107,266 - +0.9 2,107,266 - +1.9 2,107,266 - +0.9 2,107,266 - +1.9 2,107,266 - +1.1 2,107,266 - -0.7 2,107,266 - -0.7 2,107,266 - -0.3 2,107,268 - -0.3 2,107,302 - -0.2 2,107,302 - +1.1 2,107,302 - +0.1 2,107,334 - -0.1 2,107,402 - +1.5 2,107,458 - +0.1 2,107,505 - -0.0 2,107,523 + -2.5 2,107,557 - -1.0 2,107,596 + +0.6 2,107,596 + +0.4 2,107,821 + PGA1_c20290 0.26 -0.7 2,107,892 + PGA1_c20290 0.31 -0.6 2,107,911 - PGA1_c20290 0.33 +0.3 2,107,981 - PGA1_c20290 0.38 -1.5 2,107,981 - PGA1_c20290 0.38 -1.3 2,108,041 - PGA1_c20290 0.43 +0.5 2,108,045 + PGA1_c20290 0.43 -0.0 2,108,053 - PGA1_c20290 0.43 +1.2 2,108,053 - PGA1_c20290 0.43 +0.1 2,108,214 - PGA1_c20290 0.56 +0.5
Or see this region's nucleotide sequence