Experiment: m.b. Phosphomycin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c19720 and PGA1_c19730 are separated by 69 nucleotides PGA1_c19730 and PGA1_c19740 overlap by 8 nucleotides PGA1_c19740 and PGA1_c19750 are separated by 104 nucleotides PGA1_c19750 and PGA1_c19760 are separated by 243 nucleotides
PGA1_c19720: PGA1_c19720 - TfoX C-terminal domain., at 2,047,869 to 2,048,198
_c19720
PGA1_c19730: PGA1_c19730 - Uncharacterized homolog of Blt101, at 2,048,268 to 2,048,438
_c19730
PGA1_c19740: PGA1_c19740 - hypothetical protein, at 2,048,431 to 2,048,955
_c19740
PGA1_c19750: PGA1_c19750 - nucleoside diphosphate kinase Ndk, at 2,049,060 to 2,049,482
_c19750
PGA1_c19760: PGA1_c19760 - ABC transporter, ATP-binding protein, at 2,049,726 to 2,051,579
_c19760
Position (kb)
2049
2050 Strain fitness (log2 ratio)
-2
-1
0
1 at 2048.149 kb on - strand, within PGA1_c19720 at 2048.164 kb on + strand, within PGA1_c19720 at 2048.174 kb on + strand at 2048.182 kb on - strand at 2048.208 kb on - strand at 2048.211 kb on + strand at 2048.250 kb on + strand at 2048.252 kb on + strand at 2048.262 kb on + strand at 2048.265 kb on + strand at 2048.331 kb on + strand, within PGA1_c19730 at 2048.331 kb on + strand at 2048.336 kb on + strand, within PGA1_c19730 at 2048.363 kb on + strand, within PGA1_c19730 at 2048.385 kb on - strand, within PGA1_c19730 at 2048.403 kb on + strand, within PGA1_c19730 at 2048.403 kb on + strand, within PGA1_c19730 at 2048.440 kb on + strand at 2048.491 kb on + strand, within PGA1_c19740 at 2048.492 kb on + strand, within PGA1_c19740 at 2048.690 kb on + strand, within PGA1_c19740 at 2048.693 kb on - strand, within PGA1_c19740 at 2048.732 kb on + strand, within PGA1_c19740 at 2048.740 kb on - strand, within PGA1_c19740 at 2048.824 kb on - strand, within PGA1_c19740 at 2048.870 kb on + strand, within PGA1_c19740 at 2049.605 kb on + strand at 2049.639 kb on - strand at 2049.697 kb on + strand at 2049.710 kb on + strand at 2049.711 kb on + strand at 2049.756 kb on + strand at 2049.764 kb on - strand at 2049.812 kb on + strand at 2049.849 kb on + strand at 2049.905 kb on + strand at 2050.005 kb on - strand, within PGA1_c19760 at 2050.016 kb on + strand, within PGA1_c19760 at 2050.074 kb on + strand, within PGA1_c19760 at 2050.119 kb on + strand, within PGA1_c19760 at 2050.133 kb on - strand, within PGA1_c19760 at 2050.309 kb on + strand, within PGA1_c19760 at 2050.346 kb on - strand, within PGA1_c19760 at 2050.441 kb on + strand, within PGA1_c19760
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml remove 2,048,149 - PGA1_c19720 0.85 +0.5 2,048,164 + PGA1_c19720 0.89 +1.2 2,048,174 + -1.3 2,048,182 - -0.5 2,048,208 - +1.1 2,048,211 + +0.1 2,048,250 + +0.9 2,048,252 + +0.6 2,048,262 + +0.9 2,048,265 + +1.5 2,048,331 + PGA1_c19730 0.37 -0.2 2,048,331 + -1.8 2,048,336 + PGA1_c19730 0.40 -1.1 2,048,363 + PGA1_c19730 0.56 -0.9 2,048,385 - PGA1_c19730 0.68 +0.3 2,048,403 + PGA1_c19730 0.79 -2.3 2,048,403 + PGA1_c19730 0.79 +0.7 2,048,440 + -1.1 2,048,491 + PGA1_c19740 0.11 -1.9 2,048,492 + PGA1_c19740 0.12 +0.3 2,048,690 + PGA1_c19740 0.49 +0.8 2,048,693 - PGA1_c19740 0.50 +0.6 2,048,732 + PGA1_c19740 0.57 -0.5 2,048,740 - PGA1_c19740 0.59 -2.3 2,048,824 - PGA1_c19740 0.75 -0.7 2,048,870 + PGA1_c19740 0.84 +1.0 2,049,605 + -0.6 2,049,639 - -1.3 2,049,697 + +1.7 2,049,710 + +0.2 2,049,711 + +0.5 2,049,756 + +0.5 2,049,764 - +0.5 2,049,812 + -0.3 2,049,849 + +1.0 2,049,905 + -0.7 2,050,005 - PGA1_c19760 0.15 -0.7 2,050,016 + PGA1_c19760 0.16 +0.3 2,050,074 + PGA1_c19760 0.19 +0.9 2,050,119 + PGA1_c19760 0.21 +0.6 2,050,133 - PGA1_c19760 0.22 -1.2 2,050,309 + PGA1_c19760 0.31 -0.4 2,050,346 - PGA1_c19760 0.33 +0.2 2,050,441 + PGA1_c19760 0.39 -0.5
Or see this region's nucleotide sequence