Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c19750

Experiment: m.b. Phosphomycin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c19720 and PGA1_c19730 are separated by 69 nucleotidesPGA1_c19730 and PGA1_c19740 overlap by 8 nucleotidesPGA1_c19740 and PGA1_c19750 are separated by 104 nucleotidesPGA1_c19750 and PGA1_c19760 are separated by 243 nucleotides PGA1_c19720: PGA1_c19720 - TfoX C-terminal domain., at 2,047,869 to 2,048,198 _c19720 PGA1_c19730: PGA1_c19730 - Uncharacterized homolog of Blt101, at 2,048,268 to 2,048,438 _c19730 PGA1_c19740: PGA1_c19740 - hypothetical protein, at 2,048,431 to 2,048,955 _c19740 PGA1_c19750: PGA1_c19750 - nucleoside diphosphate kinase Ndk, at 2,049,060 to 2,049,482 _c19750 PGA1_c19760: PGA1_c19760 - ABC transporter, ATP-binding protein, at 2,049,726 to 2,051,579 _c19760 Position (kb) 2049 2050Strain fitness (log2 ratio) -2 -1 0 1at 2048.149 kb on - strand, within PGA1_c19720at 2048.164 kb on + strand, within PGA1_c19720at 2048.174 kb on + strandat 2048.182 kb on - strandat 2048.208 kb on - strandat 2048.211 kb on + strandat 2048.250 kb on + strandat 2048.252 kb on + strandat 2048.262 kb on + strandat 2048.265 kb on + strandat 2048.331 kb on + strand, within PGA1_c19730at 2048.331 kb on + strandat 2048.336 kb on + strand, within PGA1_c19730at 2048.363 kb on + strand, within PGA1_c19730at 2048.385 kb on - strand, within PGA1_c19730at 2048.403 kb on + strand, within PGA1_c19730at 2048.403 kb on + strand, within PGA1_c19730at 2048.440 kb on + strandat 2048.491 kb on + strand, within PGA1_c19740at 2048.492 kb on + strand, within PGA1_c19740at 2048.690 kb on + strand, within PGA1_c19740at 2048.693 kb on - strand, within PGA1_c19740at 2048.732 kb on + strand, within PGA1_c19740at 2048.740 kb on - strand, within PGA1_c19740at 2048.824 kb on - strand, within PGA1_c19740at 2048.870 kb on + strand, within PGA1_c19740at 2049.605 kb on + strandat 2049.639 kb on - strandat 2049.697 kb on + strandat 2049.710 kb on + strandat 2049.711 kb on + strandat 2049.756 kb on + strandat 2049.764 kb on - strandat 2049.812 kb on + strandat 2049.849 kb on + strandat 2049.905 kb on + strandat 2050.005 kb on - strand, within PGA1_c19760at 2050.016 kb on + strand, within PGA1_c19760at 2050.074 kb on + strand, within PGA1_c19760at 2050.119 kb on + strand, within PGA1_c19760at 2050.133 kb on - strand, within PGA1_c19760at 2050.309 kb on + strand, within PGA1_c19760at 2050.346 kb on - strand, within PGA1_c19760at 2050.441 kb on + strand, within PGA1_c19760

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml
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2,048,149 - PGA1_c19720 0.85 +0.5
2,048,164 + PGA1_c19720 0.89 +1.2
2,048,174 + -1.3
2,048,182 - -0.5
2,048,208 - +1.1
2,048,211 + +0.1
2,048,250 + +0.9
2,048,252 + +0.6
2,048,262 + +0.9
2,048,265 + +1.5
2,048,331 + PGA1_c19730 0.37 -0.2
2,048,331 + -1.8
2,048,336 + PGA1_c19730 0.40 -1.1
2,048,363 + PGA1_c19730 0.56 -0.9
2,048,385 - PGA1_c19730 0.68 +0.3
2,048,403 + PGA1_c19730 0.79 -2.3
2,048,403 + PGA1_c19730 0.79 +0.7
2,048,440 + -1.1
2,048,491 + PGA1_c19740 0.11 -1.9
2,048,492 + PGA1_c19740 0.12 +0.3
2,048,690 + PGA1_c19740 0.49 +0.8
2,048,693 - PGA1_c19740 0.50 +0.6
2,048,732 + PGA1_c19740 0.57 -0.5
2,048,740 - PGA1_c19740 0.59 -2.3
2,048,824 - PGA1_c19740 0.75 -0.7
2,048,870 + PGA1_c19740 0.84 +1.0
2,049,605 + -0.6
2,049,639 - -1.3
2,049,697 + +1.7
2,049,710 + +0.2
2,049,711 + +0.5
2,049,756 + +0.5
2,049,764 - +0.5
2,049,812 + -0.3
2,049,849 + +1.0
2,049,905 + -0.7
2,050,005 - PGA1_c19760 0.15 -0.7
2,050,016 + PGA1_c19760 0.16 +0.3
2,050,074 + PGA1_c19760 0.19 +0.9
2,050,119 + PGA1_c19760 0.21 +0.6
2,050,133 - PGA1_c19760 0.22 -1.2
2,050,309 + PGA1_c19760 0.31 -0.4
2,050,346 - PGA1_c19760 0.33 +0.2
2,050,441 + PGA1_c19760 0.39 -0.5

Or see this region's nucleotide sequence