Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1792 and HP15_1793 are separated by 33 nucleotides HP15_1793 and HP15_1794 are separated by 1 nucleotides HP15_1794 and HP15_1795 are separated by 284 nucleotides
HP15_1792: HP15_1792 - B12-dependent methionine synthase, at 1,883,167 to 1,886,865
_1792
HP15_1793: HP15_1793 - conserved hypothetical protein, at 1,886,899 to 1,887,135
_1793
HP15_1794: HP15_1794 - secreted protein, at 1,887,137 to 1,887,241
_1794
HP15_1795: HP15_1795 - sulfite reductase hemoprotein, beta subunit, at 1,887,526 to 1,889,148
_1795
Position (kb)
1887
1888 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1886.185 kb on + strand, within HP15_1792 at 1886.229 kb on - strand, within HP15_1792 at 1886.229 kb on - strand, within HP15_1792 at 1886.229 kb on - strand, within HP15_1792 at 1886.241 kb on + strand, within HP15_1792 at 1886.253 kb on + strand, within HP15_1792 at 1886.300 kb on - strand, within HP15_1792 at 1886.516 kb on - strand at 1886.891 kb on - strand at 1887.072 kb on + strand, within HP15_1793 at 1887.158 kb on - strand, within HP15_1794 at 1887.244 kb on + strand at 1887.304 kb on + strand at 1887.353 kb on + strand at 1887.426 kb on + strand at 1887.649 kb on - strand at 1888.010 kb on + strand, within HP15_1795 at 1888.018 kb on - strand, within HP15_1795
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 1,886,185 + HP15_1792 0.82 -0.2 1,886,229 - HP15_1792 0.83 +2.7 1,886,229 - HP15_1792 0.83 +1.7 1,886,229 - HP15_1792 0.83 +0.4 1,886,241 + HP15_1792 0.83 +1.2 1,886,253 + HP15_1792 0.83 +0.0 1,886,300 - HP15_1792 0.85 -1.5 1,886,516 - -1.1 1,886,891 - -0.3 1,887,072 + HP15_1793 0.73 -2.0 1,887,158 - HP15_1794 0.20 -0.5 1,887,244 + -0.6 1,887,304 + +0.1 1,887,353 + +0.1 1,887,426 + +1.3 1,887,649 - -1.3 1,888,010 + HP15_1795 0.30 +0.4 1,888,018 - HP15_1795 0.30 -1.1
Or see this region's nucleotide sequence