Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c01870

Experiment: m.b. Phosphomycin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01860 and PGA1_c01870 overlap by 4 nucleotidesPGA1_c01870 and PGA1_c01880 are separated by 334 nucleotidesPGA1_c01880 and PGA1_c01890 are separated by 15 nucleotides PGA1_c01860: PGA1_c01860 - preprotein translocase SecY, at 169,674 to 171,038 _c01860 PGA1_c01870: PGA1_c01870 - adenylate kinase Adk, at 171,035 to 171,682 _c01870 PGA1_c01880: PGA1_c01880 - 30S ribosomal protein S13, at 172,017 to 172,385 _c01880 PGA1_c01890: PGA1_c01890 - 30S ribosomal protein S11, at 172,401 to 172,790 _c01890 Position (kb) 171 172Strain fitness (log2 ratio) -3 -2 -1 0 1at 171.667 kb on + strandat 171.667 kb on + strandat 171.757 kb on - strandat 171.791 kb on + strandat 171.799 kb on - strandat 171.832 kb on + strandat 171.832 kb on + strandat 171.834 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml
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171,667 + -2.4
171,667 + -1.3
171,757 - +0.7
171,791 + -0.1
171,799 - -3.1
171,832 + +0.6
171,832 + -0.3
171,834 + +0.7

Or see this region's nucleotide sequence