Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c15220

Experiment: m.b. Phosphomycin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c15210 and PGA1_c15220 are separated by 264 nucleotidesPGA1_c15220 and PGA1_c15230 are separated by 50 nucleotides PGA1_c15210: PGA1_c15210 - putative CoA-transferase, at 1,581,885 to 1,583,060 _c15210 PGA1_c15220: PGA1_c15220 - inosine-5'-monophosphate dehydrogenase GuaB, at 1,583,325 to 1,584,773 _c15220 PGA1_c15230: PGA1_c15230 - rRNA methyltransferase-like protein, at 1,584,824 to 1,586,035 _c15230 Position (kb) 1583 1584 1585Strain fitness (log2 ratio) -2 -1 0 1 2at 1582.362 kb on - strand, within PGA1_c15210at 1582.400 kb on + strand, within PGA1_c15210at 1582.412 kb on + strand, within PGA1_c15210at 1582.487 kb on - strand, within PGA1_c15210at 1582.659 kb on - strand, within PGA1_c15210at 1582.686 kb on + strand, within PGA1_c15210at 1582.797 kb on - strand, within PGA1_c15210at 1582.801 kb on + strand, within PGA1_c15210at 1582.801 kb on + strand, within PGA1_c15210at 1582.801 kb on + strand, within PGA1_c15210at 1582.809 kb on - strand, within PGA1_c15210at 1582.809 kb on - strand, within PGA1_c15210at 1582.844 kb on + strand, within PGA1_c15210at 1582.844 kb on + strand, within PGA1_c15210at 1582.844 kb on + strand, within PGA1_c15210at 1582.852 kb on - strand, within PGA1_c15210at 1582.852 kb on - strand, within PGA1_c15210at 1582.896 kb on + strand, within PGA1_c15210at 1582.911 kb on - strand, within PGA1_c15210at 1582.997 kb on + strandat 1582.997 kb on - strandat 1583.018 kb on + strandat 1583.044 kb on - strandat 1583.059 kb on + strandat 1583.143 kb on - strandat 1583.143 kb on - strandat 1583.182 kb on + strandat 1583.187 kb on + strandat 1583.195 kb on - strandat 1583.197 kb on + strandat 1583.205 kb on + strandat 1583.205 kb on + strandat 1583.212 kb on - strandat 1583.212 kb on - strandat 1583.318 kb on - strandat 1583.340 kb on + strandat 1583.364 kb on - strandat 1583.374 kb on - strandat 1583.433 kb on + strandat 1583.445 kb on + strandat 1583.593 kb on + strand, within PGA1_c15220at 1583.633 kb on - strand, within PGA1_c15220at 1583.662 kb on + strand, within PGA1_c15220at 1583.824 kb on - strand, within PGA1_c15220at 1583.895 kb on + strand, within PGA1_c15220at 1583.905 kb on + strand, within PGA1_c15220at 1584.435 kb on + strand, within PGA1_c15220at 1584.777 kb on - strandat 1584.822 kb on + strandat 1584.828 kb on - strandat 1584.936 kb on + strandat 1584.977 kb on + strand, within PGA1_c15230at 1585.100 kb on - strand, within PGA1_c15230at 1585.149 kb on - strand, within PGA1_c15230at 1585.410 kb on + strand, within PGA1_c15230at 1585.429 kb on + strand, within PGA1_c15230at 1585.510 kb on + strand, within PGA1_c15230at 1585.512 kb on - strand, within PGA1_c15230at 1585.561 kb on - strand, within PGA1_c15230at 1585.670 kb on + strand, within PGA1_c15230at 1585.734 kb on - strand, within PGA1_c15230at 1585.754 kb on - strand, within PGA1_c15230

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml
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1,582,362 - PGA1_c15210 0.41 +0.5
1,582,400 + PGA1_c15210 0.44 -0.1
1,582,412 + PGA1_c15210 0.45 -1.4
1,582,487 - PGA1_c15210 0.51 -0.2
1,582,659 - PGA1_c15210 0.66 +0.5
1,582,686 + PGA1_c15210 0.68 +0.5
1,582,797 - PGA1_c15210 0.78 +1.8
1,582,801 + PGA1_c15210 0.78 -1.1
1,582,801 + PGA1_c15210 0.78 +0.1
1,582,801 + PGA1_c15210 0.78 +0.5
1,582,809 - PGA1_c15210 0.79 -1.4
1,582,809 - PGA1_c15210 0.79 +0.6
1,582,844 + PGA1_c15210 0.82 +0.5
1,582,844 + PGA1_c15210 0.82 -0.1
1,582,844 + PGA1_c15210 0.82 +0.1
1,582,852 - PGA1_c15210 0.82 +0.0
1,582,852 - PGA1_c15210 0.82 -1.8
1,582,896 + PGA1_c15210 0.86 -0.2
1,582,911 - PGA1_c15210 0.87 -0.4
1,582,997 + +0.1
1,582,997 - +0.2
1,583,018 + -0.5
1,583,044 - +0.7
1,583,059 + +1.3
1,583,143 - +0.0
1,583,143 - -0.6
1,583,182 + +0.5
1,583,187 + -0.2
1,583,195 - +0.5
1,583,197 + +0.1
1,583,205 + +0.3
1,583,205 + -1.1
1,583,212 - +0.5
1,583,212 - +0.1
1,583,318 - +1.1
1,583,340 + -0.7
1,583,364 - -1.3
1,583,374 - -0.2
1,583,433 + -2.0
1,583,445 + +0.8
1,583,593 + PGA1_c15220 0.18 +0.1
1,583,633 - PGA1_c15220 0.21 -0.8
1,583,662 + PGA1_c15220 0.23 +0.5
1,583,824 - PGA1_c15220 0.34 -2.1
1,583,895 + PGA1_c15220 0.39 +0.2
1,583,905 + PGA1_c15220 0.40 -1.2
1,584,435 + PGA1_c15220 0.77 +1.2
1,584,777 - +1.1
1,584,822 + -0.2
1,584,828 - -0.7
1,584,936 + -1.0
1,584,977 + PGA1_c15230 0.13 -1.1
1,585,100 - PGA1_c15230 0.23 +0.2
1,585,149 - PGA1_c15230 0.27 +0.2
1,585,410 + PGA1_c15230 0.48 +0.1
1,585,429 + PGA1_c15230 0.50 -0.4
1,585,510 + PGA1_c15230 0.57 -0.5
1,585,512 - PGA1_c15230 0.57 -0.5
1,585,561 - PGA1_c15230 0.61 +1.1
1,585,670 + PGA1_c15230 0.70 -0.0
1,585,734 - PGA1_c15230 0.75 +0.6
1,585,754 - PGA1_c15230 0.77 -0.5

Or see this region's nucleotide sequence