Experiment: m.b. Phosphomycin 2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14900 and PGA1_c14910 are separated by 201 nucleotides PGA1_c14910 and PGA1_c14920 are separated by 34 nucleotides PGA1_c14920 and PGA1_c14930 are separated by 80 nucleotides
PGA1_c14900: PGA1_c14900 - delta-aminolevulinic acid dehydratase HemB, at 1,546,948 to 1,547,946
_c14900
PGA1_c14910: PGA1_c14910 - hypothetical protein, at 1,548,148 to 1,548,672
_c14910
PGA1_c14920: PGA1_c14920 - transcription-repair-coupling factor Mfd, at 1,548,707 to 1,552,174
_c14920
PGA1_c14930: PGA1_c14930 - putative MFS transporter, at 1,552,255 to 1,553,478
_c14930
Position (kb)
1548
1549
1550
1551
1552
1553 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1548.086 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.106 kb on + strand at 1548.114 kb on - strand at 1548.114 kb on - strand at 1548.131 kb on - strand at 1548.138 kb on + strand at 1548.156 kb on + strand at 1548.156 kb on - strand at 1548.181 kb on + strand at 1548.229 kb on + strand, within PGA1_c14910 at 1548.236 kb on - strand, within PGA1_c14910 at 1548.369 kb on + strand, within PGA1_c14910 at 1548.369 kb on + strand, within PGA1_c14910 at 1548.401 kb on + strand, within PGA1_c14910 at 1548.409 kb on - strand, within PGA1_c14910 at 1548.911 kb on + strand at 1549.016 kb on - strand at 1549.210 kb on + strand, within PGA1_c14920 at 1549.213 kb on - strand, within PGA1_c14920 at 1549.252 kb on - strand, within PGA1_c14920 at 1549.313 kb on - strand, within PGA1_c14920 at 1549.511 kb on - strand, within PGA1_c14920 at 1549.521 kb on - strand, within PGA1_c14920 at 1549.537 kb on + strand, within PGA1_c14920 at 1549.806 kb on + strand, within PGA1_c14920 at 1549.806 kb on + strand, within PGA1_c14920 at 1549.806 kb on - strand, within PGA1_c14920 at 1549.814 kb on - strand, within PGA1_c14920 at 1549.863 kb on - strand, within PGA1_c14920 at 1550.183 kb on + strand, within PGA1_c14920 at 1550.255 kb on - strand, within PGA1_c14920 at 1550.306 kb on - strand, within PGA1_c14920 at 1550.336 kb on + strand, within PGA1_c14920 at 1550.342 kb on - strand, within PGA1_c14920 at 1550.525 kb on + strand, within PGA1_c14920 at 1550.552 kb on + strand, within PGA1_c14920 at 1550.631 kb on + strand, within PGA1_c14920 at 1550.841 kb on - strand, within PGA1_c14920 at 1550.901 kb on + strand, within PGA1_c14920 at 1550.947 kb on + strand, within PGA1_c14920 at 1550.984 kb on - strand, within PGA1_c14920 at 1550.984 kb on - strand, within PGA1_c14920 at 1551.126 kb on + strand, within PGA1_c14920 at 1551.126 kb on + strand, within PGA1_c14920 at 1551.165 kb on - strand, within PGA1_c14920 at 1551.199 kb on + strand, within PGA1_c14920 at 1551.385 kb on + strand, within PGA1_c14920 at 1551.414 kb on - strand, within PGA1_c14920 at 1551.617 kb on - strand, within PGA1_c14920 at 1551.889 kb on + strand at 1551.889 kb on + strand at 1551.897 kb on - strand at 1551.897 kb on - strand at 1551.925 kb on + strand at 1551.933 kb on - strand at 1551.933 kb on - strand at 1551.990 kb on + strand at 1551.991 kb on - strand at 1551.991 kb on - strand at 1552.017 kb on - strand at 1552.030 kb on + strand at 1552.032 kb on - strand at 1552.057 kb on - strand at 1552.148 kb on + strand at 1552.155 kb on - strand at 1552.155 kb on - strand at 1552.155 kb on - strand at 1552.211 kb on - strand at 1552.221 kb on - strand at 1552.221 kb on - strand at 1552.221 kb on - strand at 1552.221 kb on - strand at 1552.472 kb on + strand, within PGA1_c14930 at 1552.472 kb on + strand, within PGA1_c14930 at 1552.488 kb on + strand, within PGA1_c14930 at 1552.496 kb on - strand, within PGA1_c14930 at 1552.496 kb on - strand, within PGA1_c14930 at 1552.534 kb on - strand, within PGA1_c14930 at 1552.534 kb on - strand, within PGA1_c14930 at 1552.534 kb on - strand, within PGA1_c14930 at 1552.534 kb on - strand, within PGA1_c14930 at 1552.551 kb on - strand, within PGA1_c14930 at 1552.577 kb on - strand, within PGA1_c14930 at 1552.671 kb on + strand, within PGA1_c14930 at 1552.709 kb on - strand, within PGA1_c14930 at 1552.754 kb on + strand, within PGA1_c14930 at 1552.762 kb on - strand, within PGA1_c14930 at 1552.762 kb on - strand, within PGA1_c14930 at 1552.762 kb on - strand, within PGA1_c14930 at 1552.762 kb on - strand, within PGA1_c14930 at 1552.793 kb on - strand, within PGA1_c14930 at 1552.808 kb on + strand, within PGA1_c14930 at 1552.816 kb on - strand, within PGA1_c14930 at 1552.854 kb on - strand, within PGA1_c14930 at 1552.864 kb on - strand, within PGA1_c14930 at 1552.920 kb on + strand, within PGA1_c14930 at 1553.084 kb on + strand, within PGA1_c14930
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml remove 1,548,086 + +0.5 1,548,106 + +0.4 1,548,106 + -1.1 1,548,106 + -0.3 1,548,106 + -0.2 1,548,106 + +0.0 1,548,106 + +0.8 1,548,106 + -0.5 1,548,106 + -0.7 1,548,114 - +0.4 1,548,114 - +0.7 1,548,131 - +0.8 1,548,138 + +0.4 1,548,156 + -0.4 1,548,156 - -0.1 1,548,181 + -1.6 1,548,229 + PGA1_c14910 0.15 +0.3 1,548,236 - PGA1_c14910 0.17 +0.3 1,548,369 + PGA1_c14910 0.42 -0.3 1,548,369 + PGA1_c14910 0.42 -0.1 1,548,401 + PGA1_c14910 0.48 -0.9 1,548,409 - PGA1_c14910 0.50 +1.3 1,548,911 + +0.5 1,549,016 - +0.2 1,549,210 + PGA1_c14920 0.15 +1.4 1,549,213 - PGA1_c14920 0.15 -0.7 1,549,252 - PGA1_c14920 0.16 +1.3 1,549,313 - PGA1_c14920 0.17 +1.3 1,549,511 - PGA1_c14920 0.23 -0.5 1,549,521 - PGA1_c14920 0.23 +1.3 1,549,537 + PGA1_c14920 0.24 -0.3 1,549,806 + PGA1_c14920 0.32 +0.1 1,549,806 + PGA1_c14920 0.32 -0.1 1,549,806 - PGA1_c14920 0.32 +0.1 1,549,814 - PGA1_c14920 0.32 +1.3 1,549,863 - PGA1_c14920 0.33 +0.1 1,550,183 + PGA1_c14920 0.43 -0.6 1,550,255 - PGA1_c14920 0.45 +1.3 1,550,306 - PGA1_c14920 0.46 -0.2 1,550,336 + PGA1_c14920 0.47 +1.6 1,550,342 - PGA1_c14920 0.47 +2.2 1,550,525 + PGA1_c14920 0.52 +0.4 1,550,552 + PGA1_c14920 0.53 +1.2 1,550,631 + PGA1_c14920 0.55 +0.0 1,550,841 - PGA1_c14920 0.62 +0.1 1,550,901 + PGA1_c14920 0.63 +1.6 1,550,947 + PGA1_c14920 0.65 +1.1 1,550,984 - PGA1_c14920 0.66 +0.4 1,550,984 - PGA1_c14920 0.66 +1.2 1,551,126 + PGA1_c14920 0.70 -1.8 1,551,126 + PGA1_c14920 0.70 +2.1 1,551,165 - PGA1_c14920 0.71 -0.1 1,551,199 + PGA1_c14920 0.72 +0.5 1,551,385 + PGA1_c14920 0.77 -1.8 1,551,414 - PGA1_c14920 0.78 -0.3 1,551,617 - PGA1_c14920 0.84 +1.3 1,551,889 + -0.3 1,551,889 + +0.5 1,551,897 - +0.4 1,551,897 - +1.0 1,551,925 + +0.1 1,551,933 - +1.4 1,551,933 - +0.0 1,551,990 + +1.0 1,551,991 - -0.5 1,551,991 - +0.8 1,552,017 - +0.4 1,552,030 + +0.3 1,552,032 - -0.5 1,552,057 - +0.3 1,552,148 + +0.5 1,552,155 - +0.5 1,552,155 - +0.5 1,552,155 - -0.5 1,552,211 - -1.6 1,552,221 - -0.1 1,552,221 - -1.1 1,552,221 - +0.4 1,552,221 - +0.5 1,552,472 + PGA1_c14930 0.18 -0.6 1,552,472 + PGA1_c14930 0.18 -1.4 1,552,488 + PGA1_c14930 0.19 -0.1 1,552,496 - PGA1_c14930 0.20 -0.5 1,552,496 - PGA1_c14930 0.20 +0.3 1,552,534 - PGA1_c14930 0.23 -0.6 1,552,534 - PGA1_c14930 0.23 -0.1 1,552,534 - PGA1_c14930 0.23 -0.9 1,552,534 - PGA1_c14930 0.23 +0.9 1,552,551 - PGA1_c14930 0.24 +1.4 1,552,577 - PGA1_c14930 0.26 -0.9 1,552,671 + PGA1_c14930 0.34 +0.8 1,552,709 - PGA1_c14930 0.37 +0.5 1,552,754 + PGA1_c14930 0.41 +0.5 1,552,762 - PGA1_c14930 0.41 -0.4 1,552,762 - PGA1_c14930 0.41 +0.8 1,552,762 - PGA1_c14930 0.41 -0.4 1,552,762 - PGA1_c14930 0.41 -0.5 1,552,793 - PGA1_c14930 0.44 +0.9 1,552,808 + PGA1_c14930 0.45 -0.5 1,552,816 - PGA1_c14930 0.46 -0.7 1,552,854 - PGA1_c14930 0.49 +0.5 1,552,864 - PGA1_c14930 0.50 +0.5 1,552,920 + PGA1_c14930 0.54 -0.2 1,553,084 + PGA1_c14930 0.68 -0.5
Or see this region's nucleotide sequence