Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12730

Experiment: m.b. Phosphomycin 2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c12720 and PGA1_c12730 are separated by 115 nucleotidesPGA1_c12730 and PGA1_c12740 are separated by 11 nucleotidesPGA1_c12740 and PGA1_c12750 overlap by 1 nucleotidesPGA1_c12750 and PGA1_c12760 are separated by 120 nucleotides PGA1_c12720: PGA1_c12720 - Flagellar motor switch protein, at 1,318,756 to 1,320,138 _c12720 PGA1_c12730: PGA1_c12730 - TIGR01244 family protein, at 1,320,254 to 1,320,703 _c12730 PGA1_c12740: PGA1_c12740 - Predicted transporter component, at 1,320,715 to 1,321,146 _c12740 PGA1_c12750: PGA1_c12750 - Predicted transporter component, at 1,321,146 to 1,321,574 _c12750 PGA1_c12760: PGA1_c12760 - beta-lactamase hydrolase-like protein Blh, at 1,321,695 to 1,322,558 _c12760 Position (kb) 1320 1321Strain fitness (log2 ratio) -2 -1 0 1at 1319.297 kb on - strand, within PGA1_c12720at 1319.314 kb on + strand, within PGA1_c12720at 1319.342 kb on + strand, within PGA1_c12720at 1319.345 kb on - strand, within PGA1_c12720at 1319.347 kb on + strand, within PGA1_c12720at 1319.350 kb on - strand, within PGA1_c12720at 1319.395 kb on - strand, within PGA1_c12720at 1319.404 kb on + strand, within PGA1_c12720at 1319.464 kb on + strand, within PGA1_c12720at 1319.464 kb on + strand, within PGA1_c12720at 1319.464 kb on + strand, within PGA1_c12720at 1319.464 kb on + strand, within PGA1_c12720at 1319.474 kb on + strand, within PGA1_c12720at 1319.474 kb on + strand, within PGA1_c12720at 1319.516 kb on - strand, within PGA1_c12720at 1319.533 kb on + strand, within PGA1_c12720at 1319.607 kb on + strand, within PGA1_c12720at 1319.607 kb on + strand, within PGA1_c12720at 1319.607 kb on + strand, within PGA1_c12720at 1319.615 kb on - strand, within PGA1_c12720at 1319.615 kb on - strand, within PGA1_c12720at 1319.630 kb on + strand, within PGA1_c12720at 1319.671 kb on + strand, within PGA1_c12720at 1319.671 kb on + strand, within PGA1_c12720at 1319.679 kb on - strand, within PGA1_c12720at 1319.716 kb on - strand, within PGA1_c12720at 1319.746 kb on - strand, within PGA1_c12720at 1319.809 kb on - strand, within PGA1_c12720at 1319.809 kb on - strand, within PGA1_c12720at 1319.819 kb on - strand, within PGA1_c12720at 1319.829 kb on + strand, within PGA1_c12720at 1319.829 kb on + strand, within PGA1_c12720at 1319.829 kb on + strand, within PGA1_c12720at 1319.847 kb on - strand, within PGA1_c12720at 1319.848 kb on + strand, within PGA1_c12720at 1319.882 kb on - strand, within PGA1_c12720at 1320.013 kb on - strandat 1320.020 kb on - strandat 1320.049 kb on + strandat 1320.049 kb on + strandat 1320.050 kb on + strandat 1320.109 kb on - strandat 1320.115 kb on + strandat 1320.123 kb on - strandat 1320.123 kb on - strandat 1320.127 kb on + strandat 1320.133 kb on + strandat 1320.214 kb on + strandat 1320.222 kb on - strandat 1320.274 kb on + strandat 1320.281 kb on - strandat 1320.315 kb on + strand, within PGA1_c12730at 1320.423 kb on + strand, within PGA1_c12730at 1320.441 kb on - strand, within PGA1_c12730at 1320.736 kb on + strandat 1320.882 kb on + strand, within PGA1_c12740at 1320.926 kb on - strand, within PGA1_c12740at 1320.970 kb on - strand, within PGA1_c12740at 1321.057 kb on + strand, within PGA1_c12740at 1321.057 kb on + strand, within PGA1_c12740at 1321.057 kb on + strand, within PGA1_c12740at 1321.057 kb on + strand, within PGA1_c12740at 1321.065 kb on - strand, within PGA1_c12740at 1321.065 kb on - strand, within PGA1_c12740at 1321.088 kb on + strand, within PGA1_c12740at 1321.098 kb on + strand, within PGA1_c12740at 1321.173 kb on - strandat 1321.189 kb on - strand, within PGA1_c12750at 1321.190 kb on - strand, within PGA1_c12750at 1321.225 kb on - strand, within PGA1_c12750at 1321.388 kb on - strand, within PGA1_c12750at 1321.508 kb on + strand, within PGA1_c12750at 1321.530 kb on + strand, within PGA1_c12750at 1321.583 kb on - strandat 1321.602 kb on + strandat 1321.606 kb on - strandat 1321.663 kb on + strandat 1321.668 kb on + strandat 1321.676 kb on - strandat 1321.701 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 2 mg/ml
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1,319,297 - PGA1_c12720 0.39 +0.1
1,319,314 + PGA1_c12720 0.40 +0.4
1,319,342 + PGA1_c12720 0.42 -0.2
1,319,345 - PGA1_c12720 0.43 -0.3
1,319,347 + PGA1_c12720 0.43 -0.1
1,319,350 - PGA1_c12720 0.43 -0.3
1,319,395 - PGA1_c12720 0.46 -0.1
1,319,404 + PGA1_c12720 0.47 +1.6
1,319,464 + PGA1_c12720 0.51 -0.2
1,319,464 + PGA1_c12720 0.51 -0.8
1,319,464 + PGA1_c12720 0.51 -0.2
1,319,464 + PGA1_c12720 0.51 +0.3
1,319,474 + PGA1_c12720 0.52 -0.6
1,319,474 + PGA1_c12720 0.52 -0.4
1,319,516 - PGA1_c12720 0.55 +0.1
1,319,533 + PGA1_c12720 0.56 +0.3
1,319,607 + PGA1_c12720 0.62 +0.8
1,319,607 + PGA1_c12720 0.62 -1.4
1,319,607 + PGA1_c12720 0.62 -0.1
1,319,615 - PGA1_c12720 0.62 -0.8
1,319,615 - PGA1_c12720 0.62 -1.0
1,319,630 + PGA1_c12720 0.63 +0.3
1,319,671 + PGA1_c12720 0.66 -1.1
1,319,671 + PGA1_c12720 0.66 +0.8
1,319,679 - PGA1_c12720 0.67 -1.5
1,319,716 - PGA1_c12720 0.69 +0.5
1,319,746 - PGA1_c12720 0.72 -0.3
1,319,809 - PGA1_c12720 0.76 -0.9
1,319,809 - PGA1_c12720 0.76 -0.4
1,319,819 - PGA1_c12720 0.77 -0.8
1,319,829 + PGA1_c12720 0.78 +0.1
1,319,829 + PGA1_c12720 0.78 +1.5
1,319,829 + PGA1_c12720 0.78 +1.1
1,319,847 - PGA1_c12720 0.79 -0.0
1,319,848 + PGA1_c12720 0.79 -0.2
1,319,882 - PGA1_c12720 0.81 +0.3
1,320,013 - +0.2
1,320,020 - -0.5
1,320,049 + -2.2
1,320,049 + +0.0
1,320,050 + +0.3
1,320,109 - +0.1
1,320,115 + -1.0
1,320,123 - +0.4
1,320,123 - -0.8
1,320,127 + +1.0
1,320,133 + +0.0
1,320,214 + +0.1
1,320,222 - -0.7
1,320,274 + -0.3
1,320,281 - +0.5
1,320,315 + PGA1_c12730 0.14 +0.4
1,320,423 + PGA1_c12730 0.38 +0.8
1,320,441 - PGA1_c12730 0.42 +0.3
1,320,736 + -1.0
1,320,882 + PGA1_c12740 0.39 -0.4
1,320,926 - PGA1_c12740 0.49 -0.2
1,320,970 - PGA1_c12740 0.59 -1.3
1,321,057 + PGA1_c12740 0.79 -1.8
1,321,057 + PGA1_c12740 0.79 +0.6
1,321,057 + PGA1_c12740 0.79 +0.9
1,321,057 + PGA1_c12740 0.79 +0.3
1,321,065 - PGA1_c12740 0.81 -1.2
1,321,065 - PGA1_c12740 0.81 +1.1
1,321,088 + PGA1_c12740 0.86 +0.3
1,321,098 + PGA1_c12740 0.89 +0.7
1,321,173 - +1.6
1,321,189 - PGA1_c12750 0.10 +0.1
1,321,190 - PGA1_c12750 0.10 -0.0
1,321,225 - PGA1_c12750 0.18 -0.6
1,321,388 - PGA1_c12750 0.56 -0.6
1,321,508 + PGA1_c12750 0.84 -1.8
1,321,530 + PGA1_c12750 0.90 -0.2
1,321,583 - -0.8
1,321,602 + +1.2
1,321,606 - -1.8
1,321,663 + -0.4
1,321,668 + +0.3
1,321,676 - -0.6
1,321,701 - -0.5

Or see this region's nucleotide sequence