Experiment: m.b. nitrite 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1135 and HP15_1136 are separated by 5 nucleotides HP15_1136 and HP15_1137 are separated by 1 nucleotides HP15_1137 and HP15_1138 are separated by 87 nucleotides
HP15_1135: HP15_1135 - DNA recombination protein RmuC, at 1,164,044 to 1,165,519
_1135
HP15_1136: HP15_1136 - protein containing tetratricopeptide repeat protein, at 1,165,525 to 1,166,379
_1136
HP15_1137: HP15_1137 - helix-turn-helix domain containing protein, AraC type, at 1,166,381 to 1,167,412
_1137
HP15_1138: HP15_1138 - L-carnitine dehydratase/bile acid-inducible protein F, at 1,167,500 to 1,168,717
_1138
Position (kb)
1166
1167
1168 Strain fitness (log2 ratio)
-1
0
1 at 1165.544 kb on - strand at 1165.634 kb on + strand, within HP15_1136 at 1165.654 kb on - strand, within HP15_1136 at 1165.671 kb on + strand, within HP15_1136 at 1165.679 kb on - strand, within HP15_1136 at 1165.861 kb on - strand, within HP15_1136 at 1165.921 kb on - strand, within HP15_1136 at 1166.211 kb on + strand, within HP15_1136 at 1166.250 kb on - strand, within HP15_1136 at 1166.264 kb on + strand, within HP15_1136 at 1166.270 kb on + strand, within HP15_1136 at 1166.272 kb on - strand, within HP15_1136 at 1166.619 kb on + strand, within HP15_1137 at 1166.701 kb on + strand, within HP15_1137 at 1166.709 kb on - strand, within HP15_1137 at 1166.807 kb on - strand, within HP15_1137 at 1166.809 kb on - strand, within HP15_1137 at 1166.819 kb on + strand, within HP15_1137 at 1166.848 kb on + strand, within HP15_1137 at 1167.353 kb on + strand at 1167.353 kb on + strand at 1167.361 kb on - strand at 1167.474 kb on - strand at 1167.631 kb on + strand, within HP15_1138 at 1167.689 kb on + strand, within HP15_1138 at 1167.689 kb on + strand, within HP15_1138 at 1167.689 kb on + strand, within HP15_1138 at 1167.697 kb on - strand, within HP15_1138 at 1167.767 kb on + strand, within HP15_1138 at 1167.875 kb on - strand, within HP15_1138 at 1167.916 kb on - strand, within HP15_1138 at 1167.925 kb on + strand, within HP15_1138 at 1168.118 kb on - strand, within HP15_1138 at 1168.175 kb on - strand, within HP15_1138 at 1168.279 kb on + strand, within HP15_1138 at 1168.301 kb on - strand, within HP15_1138
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM remove 1,165,544 - -0.3 1,165,634 + HP15_1136 0.13 -0.4 1,165,654 - HP15_1136 0.15 +0.4 1,165,671 + HP15_1136 0.17 -0.7 1,165,679 - HP15_1136 0.18 -0.8 1,165,861 - HP15_1136 0.39 -0.5 1,165,921 - HP15_1136 0.46 +0.4 1,166,211 + HP15_1136 0.80 +0.6 1,166,250 - HP15_1136 0.85 +1.6 1,166,264 + HP15_1136 0.86 +0.1 1,166,270 + HP15_1136 0.87 +0.3 1,166,272 - HP15_1136 0.87 +0.5 1,166,619 + HP15_1137 0.23 -0.1 1,166,701 + HP15_1137 0.31 +0.2 1,166,709 - HP15_1137 0.32 +0.3 1,166,807 - HP15_1137 0.41 -0.7 1,166,809 - HP15_1137 0.41 -1.4 1,166,819 + HP15_1137 0.42 -1.0 1,166,848 + HP15_1137 0.45 -1.1 1,167,353 + -0.6 1,167,353 + +0.2 1,167,361 - -0.2 1,167,474 - -0.8 1,167,631 + HP15_1138 0.11 +0.0 1,167,689 + HP15_1138 0.16 +0.0 1,167,689 + HP15_1138 0.16 +0.6 1,167,689 + HP15_1138 0.16 +0.3 1,167,697 - HP15_1138 0.16 +0.9 1,167,767 + HP15_1138 0.22 +0.4 1,167,875 - HP15_1138 0.31 +0.8 1,167,916 - HP15_1138 0.34 +0.4 1,167,925 + HP15_1138 0.35 +0.2 1,168,118 - HP15_1138 0.51 +0.4 1,168,175 - HP15_1138 0.55 -0.7 1,168,279 + HP15_1138 0.64 -1.0 1,168,301 - HP15_1138 0.66 -0.2
Or see this region's nucleotide sequence