Strain Fitness in Marinobacter adhaerens HP15 around HP15_1137

Experiment: m.b. nitrite 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1135 and HP15_1136 are separated by 5 nucleotidesHP15_1136 and HP15_1137 are separated by 1 nucleotidesHP15_1137 and HP15_1138 are separated by 87 nucleotides HP15_1135: HP15_1135 - DNA recombination protein RmuC, at 1,164,044 to 1,165,519 _1135 HP15_1136: HP15_1136 - protein containing tetratricopeptide repeat protein, at 1,165,525 to 1,166,379 _1136 HP15_1137: HP15_1137 - helix-turn-helix domain containing protein, AraC type, at 1,166,381 to 1,167,412 _1137 HP15_1138: HP15_1138 - L-carnitine dehydratase/bile acid-inducible protein F, at 1,167,500 to 1,168,717 _1138 Position (kb) 1166 1167 1168Strain fitness (log2 ratio) -1 0 1at 1165.544 kb on - strandat 1165.634 kb on + strand, within HP15_1136at 1165.654 kb on - strand, within HP15_1136at 1165.671 kb on + strand, within HP15_1136at 1165.679 kb on - strand, within HP15_1136at 1165.861 kb on - strand, within HP15_1136at 1165.921 kb on - strand, within HP15_1136at 1166.211 kb on + strand, within HP15_1136at 1166.250 kb on - strand, within HP15_1136at 1166.264 kb on + strand, within HP15_1136at 1166.270 kb on + strand, within HP15_1136at 1166.272 kb on - strand, within HP15_1136at 1166.619 kb on + strand, within HP15_1137at 1166.701 kb on + strand, within HP15_1137at 1166.709 kb on - strand, within HP15_1137at 1166.807 kb on - strand, within HP15_1137at 1166.809 kb on - strand, within HP15_1137at 1166.819 kb on + strand, within HP15_1137at 1166.848 kb on + strand, within HP15_1137at 1167.353 kb on + strandat 1167.353 kb on + strandat 1167.361 kb on - strandat 1167.474 kb on - strandat 1167.631 kb on + strand, within HP15_1138at 1167.689 kb on + strand, within HP15_1138at 1167.689 kb on + strand, within HP15_1138at 1167.689 kb on + strand, within HP15_1138at 1167.697 kb on - strand, within HP15_1138at 1167.767 kb on + strand, within HP15_1138at 1167.875 kb on - strand, within HP15_1138at 1167.916 kb on - strand, within HP15_1138at 1167.925 kb on + strand, within HP15_1138at 1168.118 kb on - strand, within HP15_1138at 1168.175 kb on - strand, within HP15_1138at 1168.279 kb on + strand, within HP15_1138at 1168.301 kb on - strand, within HP15_1138

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 10 mM
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1,165,544 - -0.3
1,165,634 + HP15_1136 0.13 -0.4
1,165,654 - HP15_1136 0.15 +0.4
1,165,671 + HP15_1136 0.17 -0.7
1,165,679 - HP15_1136 0.18 -0.8
1,165,861 - HP15_1136 0.39 -0.5
1,165,921 - HP15_1136 0.46 +0.4
1,166,211 + HP15_1136 0.80 +0.6
1,166,250 - HP15_1136 0.85 +1.6
1,166,264 + HP15_1136 0.86 +0.1
1,166,270 + HP15_1136 0.87 +0.3
1,166,272 - HP15_1136 0.87 +0.5
1,166,619 + HP15_1137 0.23 -0.1
1,166,701 + HP15_1137 0.31 +0.2
1,166,709 - HP15_1137 0.32 +0.3
1,166,807 - HP15_1137 0.41 -0.7
1,166,809 - HP15_1137 0.41 -1.4
1,166,819 + HP15_1137 0.42 -1.0
1,166,848 + HP15_1137 0.45 -1.1
1,167,353 + -0.6
1,167,353 + +0.2
1,167,361 - -0.2
1,167,474 - -0.8
1,167,631 + HP15_1138 0.11 +0.0
1,167,689 + HP15_1138 0.16 +0.0
1,167,689 + HP15_1138 0.16 +0.6
1,167,689 + HP15_1138 0.16 +0.3
1,167,697 - HP15_1138 0.16 +0.9
1,167,767 + HP15_1138 0.22 +0.4
1,167,875 - HP15_1138 0.31 +0.8
1,167,916 - HP15_1138 0.34 +0.4
1,167,925 + HP15_1138 0.35 +0.2
1,168,118 - HP15_1138 0.51 +0.4
1,168,175 - HP15_1138 0.55 -0.7
1,168,279 + HP15_1138 0.64 -1.0
1,168,301 - HP15_1138 0.66 -0.2

Or see this region's nucleotide sequence