Strain Fitness in Dechlorosoma suillum PS around Dsui_3426

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3424 and Dsui_3425 are separated by 82 nucleotidesDsui_3425 and Dsui_3426 are separated by 189 nucleotidesDsui_3426 and Dsui_3427 are separated by 138 nucleotidesDsui_3427 and Dsui_3428 are separated by 118 nucleotides Dsui_3424: Dsui_3424 - ATP:cob(I)alamin adenosyltransferase, at 3,675,774 to 3,676,352 _3424 Dsui_3425: Dsui_3425 - putative translation initiation inhibitor, yjgF family, at 3,676,435 to 3,676,833 _3425 Dsui_3426: Dsui_3426 - transcriptional regulator, at 3,677,023 to 3,677,925 _3426 Dsui_3427: Dsui_3427 - nicotinamidase-like amidase, at 3,678,064 to 3,678,588 _3427 Dsui_3428: Dsui_3428 - transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 3,678,707 to 3,679,666 _3428 Position (kb) 3677 3678Strain fitness (log2 ratio) -2 -1 0 1at 3676.039 kb on + strand, within Dsui_3424at 3676.042 kb on - strandat 3676.259 kb on + strand, within Dsui_3424at 3676.313 kb on + strandat 3676.489 kb on - strandat 3676.497 kb on + strand, within Dsui_3425at 3676.538 kb on - strand, within Dsui_3425at 3676.561 kb on + strandat 3676.621 kb on + strand, within Dsui_3425at 3676.646 kb on + strandat 3676.654 kb on - strandat 3676.778 kb on + strand, within Dsui_3425at 3676.788 kb on + strandat 3676.788 kb on - strandat 3676.796 kb on - strandat 3676.895 kb on + strandat 3676.904 kb on + strandat 3676.921 kb on - strandat 3676.930 kb on + strandat 3677.093 kb on - strandat 3677.290 kb on - strand, within Dsui_3426at 3677.353 kb on + strand, within Dsui_3426at 3677.457 kb on - strand, within Dsui_3426at 3677.467 kb on - strand, within Dsui_3426at 3677.532 kb on - strandat 3677.532 kb on - strandat 3677.587 kb on - strand, within Dsui_3426at 3677.604 kb on + strand, within Dsui_3426at 3677.772 kb on - strandat 3678.062 kb on + strandat 3678.062 kb on + strandat 3678.062 kb on + strandat 3678.062 kb on + strandat 3678.062 kb on + strandat 3678.062 kb on + strandat 3678.062 kb on + strandat 3678.062 kb on + strandat 3678.062 kb on + strandat 3678.149 kb on + strand, within Dsui_3427at 3678.191 kb on + strandat 3678.196 kb on + strandat 3678.199 kb on - strandat 3678.251 kb on - strandat 3678.286 kb on - strandat 3678.302 kb on - strandat 3678.302 kb on - strand, within Dsui_3427at 3678.460 kb on - strandat 3678.500 kb on + strandat 3678.557 kb on + strandat 3678.836 kb on - strandat 3678.876 kb on + strand, within Dsui_3428

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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3,676,039 + Dsui_3424 0.46 -0.2
3,676,042 - -0.3
3,676,259 + Dsui_3424 0.84 +0.3
3,676,313 + -1.4
3,676,489 - -0.3
3,676,497 + Dsui_3425 0.16 -0.3
3,676,538 - Dsui_3425 0.26 -0.9
3,676,561 + +0.7
3,676,621 + Dsui_3425 0.47 -0.3
3,676,646 + -0.3
3,676,654 - +0.7
3,676,778 + Dsui_3425 0.86 -1.9
3,676,788 + -0.3
3,676,788 - +0.7
3,676,796 - +0.7
3,676,895 + +0.7
3,676,904 + +0.7
3,676,921 - -0.9
3,676,930 + -0.9
3,677,093 - -0.3
3,677,290 - Dsui_3426 0.30 -1.3
3,677,353 + Dsui_3426 0.37 +0.7
3,677,457 - Dsui_3426 0.48 -1.3
3,677,467 - Dsui_3426 0.49 -1.6
3,677,532 - +0.7
3,677,532 - -0.3
3,677,587 - Dsui_3426 0.62 +0.7
3,677,604 + Dsui_3426 0.64 -2.6
3,677,772 - -0.3
3,678,062 + +0.7
3,678,062 + +0.7
3,678,062 + -1.9
3,678,062 + -0.9
3,678,062 + -0.3
3,678,062 + -1.9
3,678,062 + +0.7
3,678,062 + +0.7
3,678,062 + +0.7
3,678,149 + Dsui_3427 0.16 -0.9
3,678,191 + +0.7
3,678,196 + +0.7
3,678,199 - +0.7
3,678,251 - -0.3
3,678,286 - -0.3
3,678,302 - +0.7
3,678,302 - Dsui_3427 0.45 +0.7
3,678,460 - +0.7
3,678,500 + -0.9
3,678,557 + +0.7
3,678,836 - +0.7
3,678,876 + Dsui_3428 0.18 -1.0

Or see this region's nucleotide sequence