Strain Fitness in Dechlorosoma suillum PS around Dsui_3319

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3318 and Dsui_3319 are separated by 226 nucleotidesDsui_3319 and Dsui_3320 are separated by 6 nucleotides Dsui_3318: Dsui_3318 - cytochrome c, mono- and diheme variants family, at 3,557,822 to 3,559,462 _3318 Dsui_3319: Dsui_3319 - uroporphyrin-III C-methyltransferase, at 3,559,689 to 3,560,486 _3319 Dsui_3320: Dsui_3320 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase, at 3,560,493 to 3,561,413 _3320 Position (kb) 3559 3560 3561Strain fitness (log2 ratio) -3 -2 -1 0 1at 3558.689 kb on - strand, within Dsui_3318at 3558.707 kb on + strand, within Dsui_3318at 3558.727 kb on - strand, within Dsui_3318at 3558.768 kb on + strandat 3558.859 kb on + strand, within Dsui_3318at 3558.959 kb on - strand, within Dsui_3318at 3558.959 kb on - strand, within Dsui_3318at 3559.006 kb on + strandat 3559.014 kb on - strand, within Dsui_3318at 3559.073 kb on + strandat 3559.146 kb on - strand, within Dsui_3318at 3559.160 kb on - strand, within Dsui_3318at 3559.170 kb on + strand, within Dsui_3318at 3559.249 kb on - strand, within Dsui_3318at 3559.260 kb on - strand, within Dsui_3318at 3559.294 kb on - strand, within Dsui_3318at 3559.301 kb on - strandat 3559.301 kb on - strandat 3559.327 kb on + strandat 3559.340 kb on - strandat 3559.340 kb on - strandat 3559.393 kb on - strandat 3559.417 kb on - strandat 3559.463 kb on + strandat 3559.476 kb on - strandat 3559.504 kb on - strandat 3559.504 kb on - strandat 3559.511 kb on - strandat 3559.533 kb on - strandat 3559.558 kb on - strandat 3559.607 kb on - strandat 3559.646 kb on + strandat 3559.651 kb on + strandat 3559.717 kb on + strandat 3559.719 kb on - strandat 3559.725 kb on - strandat 3559.888 kb on - strandat 3559.899 kb on - strand, within Dsui_3319at 3559.906 kb on + strand, within Dsui_3319at 3560.122 kb on + strand, within Dsui_3319at 3560.196 kb on + strand, within Dsui_3319at 3560.196 kb on + strand, within Dsui_3319at 3560.204 kb on - strandat 3560.318 kb on - strandat 3560.323 kb on + strand, within Dsui_3319at 3560.338 kb on + strand, within Dsui_3319at 3560.342 kb on + strand, within Dsui_3319at 3560.489 kb on - strandat 3560.508 kb on - strandat 3560.538 kb on - strandat 3560.541 kb on - strandat 3560.654 kb on - strand, within Dsui_3320at 3560.721 kb on + strand, within Dsui_3320at 3560.789 kb on + strand, within Dsui_3320at 3560.830 kb on + strand, within Dsui_3320at 3560.877 kb on - strand, within Dsui_3320at 3560.966 kb on - strand, within Dsui_3320at 3561.086 kb on + strand, within Dsui_3320at 3561.141 kb on + strandat 3561.144 kb on - strand, within Dsui_3320at 3561.152 kb on + strand, within Dsui_3320at 3561.161 kb on + strand, within Dsui_3320at 3561.199 kb on + strandat 3561.209 kb on + strand, within Dsui_3320at 3561.217 kb on - strand, within Dsui_3320at 3561.217 kb on - strand, within Dsui_3320at 3561.437 kb on - strandat 3561.481 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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3,558,689 - Dsui_3318 0.53 +0.7
3,558,707 + Dsui_3318 0.54 -1.3
3,558,727 - Dsui_3318 0.55 +0.7
3,558,768 + -0.3
3,558,859 + Dsui_3318 0.63 -0.3
3,558,959 - Dsui_3318 0.69 +0.7
3,558,959 - Dsui_3318 0.69 +0.7
3,559,006 + -0.9
3,559,014 - Dsui_3318 0.73 +0.7
3,559,073 + +0.7
3,559,146 - Dsui_3318 0.81 -0.9
3,559,160 - Dsui_3318 0.82 +0.7
3,559,170 + Dsui_3318 0.82 +0.7
3,559,249 - Dsui_3318 0.87 -2.1
3,559,260 - Dsui_3318 0.88 -2.6
3,559,294 - Dsui_3318 0.90 -3.4
3,559,301 - +0.7
3,559,301 - -1.9
3,559,327 + -0.9
3,559,340 - +0.7
3,559,340 - -0.9
3,559,393 - -0.3
3,559,417 - +0.7
3,559,463 + +0.7
3,559,476 - -2.6
3,559,504 - +0.7
3,559,504 - +0.7
3,559,511 - +0.7
3,559,533 - +0.7
3,559,558 - -0.9
3,559,607 - +0.7
3,559,646 + +0.7
3,559,651 + -0.3
3,559,717 + -0.3
3,559,719 - -0.3
3,559,725 - -1.9
3,559,888 - +0.7
3,559,899 - Dsui_3319 0.26 +0.7
3,559,906 + Dsui_3319 0.27 -0.9
3,560,122 + Dsui_3319 0.54 -0.0
3,560,196 + Dsui_3319 0.64 -3.0
3,560,196 + Dsui_3319 0.64 +1.3
3,560,204 - +0.7
3,560,318 - +0.7
3,560,323 + Dsui_3319 0.79 +1.7
3,560,338 + Dsui_3319 0.81 -0.6
3,560,342 + Dsui_3319 0.82 -1.2
3,560,489 - +0.0
3,560,508 - +0.1
3,560,538 - -0.1
3,560,541 - -0.3
3,560,654 - Dsui_3320 0.17 -0.0
3,560,721 + Dsui_3320 0.25 -1.3
3,560,789 + Dsui_3320 0.32 -0.9
3,560,830 + Dsui_3320 0.37 +0.7
3,560,877 - Dsui_3320 0.42 -0.0
3,560,966 - Dsui_3320 0.51 -0.4
3,561,086 + Dsui_3320 0.64 -0.3
3,561,141 + +0.7
3,561,144 - Dsui_3320 0.71 +0.2
3,561,152 + Dsui_3320 0.72 -0.3
3,561,161 + Dsui_3320 0.73 -0.3
3,561,199 + +0.7
3,561,209 + Dsui_3320 0.78 -0.9
3,561,217 - Dsui_3320 0.79 -0.2
3,561,217 - Dsui_3320 0.79 -0.1
3,561,437 - -0.1
3,561,481 + -1.6

Or see this region's nucleotide sequence