Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3176 and Dsui_3177 overlap by 4 nucleotides Dsui_3177 and Dsui_3178 overlap by 10 nucleotides Dsui_3178 and Dsui_3179 are separated by 16 nucleotides
Dsui_3176: Dsui_3176 - RND family efflux transporter, MFP subunit, at 3,406,898 to 3,408,184
_3176
Dsui_3177: Dsui_3177 - ABC-type antimicrobial peptide transport system, ATPase component, at 3,408,181 to 3,408,909
_3177
Dsui_3178: Dsui_3178 - ABC-type antimicrobial peptide transport system, permease component, at 3,408,900 to 3,410,111
_3178
Dsui_3179: Dsui_3179 - signal transduction histidine kinase, at 3,410,128 to 3,411,192
_3179
Position (kb)
3408
3409
3410
3411 Strain fitness (log2 ratio)
-2
-1
0
1 at 3408.046 kb on - strand at 3408.087 kb on + strand at 3408.159 kb on + strand at 3408.399 kb on + strand at 3408.407 kb on - strand at 3408.516 kb on - strand, within Dsui_3177 at 3408.518 kb on + strand, within Dsui_3177 at 3408.791 kb on - strand, within Dsui_3177 at 3408.925 kb on - strand at 3408.974 kb on + strand at 3408.977 kb on - strand at 3409.189 kb on - strand, within Dsui_3178 at 3409.208 kb on - strand, within Dsui_3178 at 3409.220 kb on - strand at 3409.274 kb on - strand at 3409.291 kb on + strand at 3409.299 kb on - strand, within Dsui_3178 at 3409.397 kb on + strand, within Dsui_3178 at 3409.400 kb on - strand at 3409.401 kb on + strand at 3409.462 kb on + strand at 3409.491 kb on - strand at 3409.532 kb on - strand at 3409.548 kb on + strand, within Dsui_3178 at 3409.577 kb on + strand at 3409.679 kb on + strand, within Dsui_3178 at 3409.756 kb on + strand, within Dsui_3178 at 3409.908 kb on + strand, within Dsui_3178 at 3410.219 kb on - strand at 3410.232 kb on + strand at 3410.425 kb on - strand at 3410.485 kb on - strand, within Dsui_3179 at 3410.504 kb on - strand, within Dsui_3179 at 3410.590 kb on - strand, within Dsui_3179 at 3410.703 kb on + strand at 3410.751 kb on + strand at 3410.759 kb on - strand, within Dsui_3179 at 3410.999 kb on - strand, within Dsui_3179
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 3,408,046 - -0.3 3,408,087 + -0.3 3,408,159 + +0.7 3,408,399 + -0.3 3,408,407 - +0.7 3,408,516 - Dsui_3177 0.46 -0.9 3,408,518 + Dsui_3177 0.46 +0.7 3,408,791 - Dsui_3177 0.84 -0.9 3,408,925 - -0.9 3,408,974 + +0.7 3,408,977 - +0.7 3,409,189 - Dsui_3178 0.24 -0.3 3,409,208 - Dsui_3178 0.25 -0.6 3,409,220 - -0.9 3,409,274 - +0.7 3,409,291 + -0.3 3,409,299 - Dsui_3178 0.33 -1.3 3,409,397 + Dsui_3178 0.41 -0.9 3,409,400 - +0.7 3,409,401 + +0.7 3,409,462 + +0.7 3,409,491 - +0.7 3,409,532 - +0.7 3,409,548 + Dsui_3178 0.53 -0.3 3,409,577 + +0.7 3,409,679 + Dsui_3178 0.64 -0.9 3,409,756 + Dsui_3178 0.71 -1.3 3,409,908 + Dsui_3178 0.83 -1.9 3,410,219 - -0.3 3,410,232 + +0.7 3,410,425 - +0.7 3,410,485 - Dsui_3179 0.34 -1.3 3,410,504 - Dsui_3179 0.35 -0.9 3,410,590 - Dsui_3179 0.43 -0.3 3,410,703 + +0.7 3,410,751 + +0.7 3,410,759 - Dsui_3179 0.59 +0.7 3,410,999 - Dsui_3179 0.82 -0.9
Or see this region's nucleotide sequence