Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3115 and Dsui_3116 overlap by 1 nucleotides Dsui_3116 and Dsui_3117 are separated by 9 nucleotides Dsui_3117 and Dsui_3118 are separated by 22 nucleotides
Dsui_3115: Dsui_3115 - hypothetical protein, at 3,337,855 to 3,338,169
_3115
Dsui_3116: Dsui_3116 - ATPase family protein associated with various cellular activities (AAA), at 3,338,169 to 3,338,960
_3116
Dsui_3117: Dsui_3117 - hypothetical protein, at 3,338,970 to 3,339,374
_3117
Dsui_3118: Dsui_3118 - polyferredoxin, at 3,339,397 to 3,340,389
_3118
Position (kb)
3338
3339
3340 Strain fitness (log2 ratio)
-2
-1
0
1 at 3338.083 kb on + strand, within Dsui_3115 at 3338.099 kb on + strand at 3338.469 kb on - strand at 3338.760 kb on + strand at 3338.975 kb on - strand at 3338.975 kb on - strand at 3339.046 kb on - strand, within Dsui_3117 at 3339.066 kb on + strand, within Dsui_3117 at 3339.066 kb on + strand, within Dsui_3117 at 3339.081 kb on + strand, within Dsui_3117 at 3339.184 kb on + strand, within Dsui_3117 at 3339.352 kb on + strand at 3339.491 kb on + strand at 3339.597 kb on + strand, within Dsui_3118 at 3339.605 kb on - strand at 3339.654 kb on + strand, within Dsui_3118 at 3339.746 kb on + strand at 3339.944 kb on + strand, within Dsui_3118 at 3339.951 kb on + strand, within Dsui_3118 at 3340.107 kb on - strand at 3340.125 kb on + strand at 3340.200 kb on + strand, within Dsui_3118 at 3340.223 kb on - strand at 3340.334 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 3,338,083 + Dsui_3115 0.72 -1.3 3,338,099 + +0.7 3,338,469 - -0.3 3,338,760 + +0.7 3,338,975 - -0.9 3,338,975 - +0.7 3,339,046 - Dsui_3117 0.19 -2.3 3,339,066 + Dsui_3117 0.24 +0.7 3,339,066 + Dsui_3117 0.24 -1.3 3,339,081 + Dsui_3117 0.27 -1.6 3,339,184 + Dsui_3117 0.53 +0.7 3,339,352 + +1.7 3,339,491 + +0.7 3,339,597 + Dsui_3118 0.20 -0.3 3,339,605 - +0.7 3,339,654 + Dsui_3118 0.26 -0.3 3,339,746 + +0.7 3,339,944 + Dsui_3118 0.55 +0.7 3,339,951 + Dsui_3118 0.56 -0.9 3,340,107 - +0.7 3,340,125 + +0.7 3,340,200 + Dsui_3118 0.81 -1.6 3,340,223 - -0.3 3,340,334 + +0.7
Or see this region's nucleotide sequence