Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3111 and Dsui_3112 are separated by 10 nucleotides Dsui_3112 and Dsui_3113 overlap by 4 nucleotides Dsui_3113 and Dsui_3114 are separated by 96 nucleotides Dsui_3114 and Dsui_3115 overlap by 14 nucleotides Dsui_3115 and Dsui_3116 overlap by 1 nucleotides
Dsui_3111: Dsui_3111 - hypothetical protein, at 3,333,042 to 3,334,334
_3111
Dsui_3112: Dsui_3112 - hypothetical protein, at 3,334,345 to 3,334,791
_3112
Dsui_3113: Dsui_3113 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,334,788 to 3,337,169
_3113
Dsui_3114: Dsui_3114 - heme/copper-type cytochrome/quinol oxidase, subunit 3, at 3,337,266 to 3,337,868
_3114
Dsui_3115: Dsui_3115 - hypothetical protein, at 3,337,855 to 3,338,169
_3115
Dsui_3116: Dsui_3116 - ATPase family protein associated with various cellular activities (AAA), at 3,338,169 to 3,338,960
_3116
Position (kb)
3334
3335
3336
3337
3338 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3333.789 kb on - strand, within Dsui_3111 at 3334.040 kb on + strand, within Dsui_3111 at 3334.067 kb on + strand, within Dsui_3111 at 3334.132 kb on + strand, within Dsui_3111 at 3334.166 kb on - strand at 3334.182 kb on - strand at 3334.231 kb on - strand at 3334.240 kb on + strand at 3334.421 kb on + strand, within Dsui_3112 at 3334.469 kb on + strand, within Dsui_3112 at 3334.514 kb on + strand, within Dsui_3112 at 3334.522 kb on - strand at 3334.580 kb on + strand, within Dsui_3112 at 3334.650 kb on - strand, within Dsui_3112 at 3334.686 kb on + strand, within Dsui_3112 at 3334.741 kb on + strand, within Dsui_3112 at 3334.752 kb on + strand at 3334.752 kb on + strand at 3334.850 kb on - strand at 3334.851 kb on - strand at 3335.200 kb on + strand, within Dsui_3113 at 3335.239 kb on + strand, within Dsui_3113 at 3335.414 kb on + strand, within Dsui_3113 at 3335.463 kb on - strand, within Dsui_3113 at 3335.586 kb on + strand, within Dsui_3113 at 3335.605 kb on + strand, within Dsui_3113 at 3335.733 kb on - strand, within Dsui_3113 at 3335.803 kb on - strand at 3335.803 kb on - strand at 3335.834 kb on + strand, within Dsui_3113 at 3335.850 kb on - strand, within Dsui_3113 at 3335.850 kb on - strand at 3335.852 kb on + strand, within Dsui_3113 at 3335.888 kb on - strand, within Dsui_3113 at 3335.906 kb on - strand at 3335.940 kb on + strand, within Dsui_3113 at 3335.958 kb on + strand, within Dsui_3113 at 3336.137 kb on - strand at 3336.180 kb on - strand, within Dsui_3113 at 3336.241 kb on + strand, within Dsui_3113 at 3336.261 kb on + strand, within Dsui_3113 at 3336.485 kb on - strand, within Dsui_3113 at 3336.487 kb on + strand, within Dsui_3113 at 3336.526 kb on + strand at 3336.628 kb on + strand, within Dsui_3113 at 3336.654 kb on - strand, within Dsui_3113 at 3336.794 kb on - strand, within Dsui_3113 at 3336.895 kb on + strand, within Dsui_3113 at 3336.903 kb on + strand, within Dsui_3113 at 3336.956 kb on + strand at 3336.956 kb on + strand at 3336.991 kb on + strand at 3337.050 kb on + strand at 3337.060 kb on + strand at 3337.164 kb on + strand at 3337.383 kb on + strand, within Dsui_3114 at 3337.413 kb on + strand, within Dsui_3114 at 3337.426 kb on - strand at 3337.445 kb on - strand at 3337.468 kb on - strand at 3337.518 kb on + strand, within Dsui_3114 at 3337.784 kb on - strand, within Dsui_3114 at 3337.825 kb on - strand at 3337.850 kb on + strand at 3337.860 kb on - strand at 3337.965 kb on + strand, within Dsui_3115 at 3338.083 kb on + strand, within Dsui_3115 at 3338.099 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 3,333,789 - Dsui_3111 0.58 +0.7 3,334,040 + Dsui_3111 0.77 -1.3 3,334,067 + Dsui_3111 0.79 +0.7 3,334,132 + Dsui_3111 0.84 -0.3 3,334,166 - +0.7 3,334,182 - +0.7 3,334,231 - -1.3 3,334,240 + -2.7 3,334,421 + Dsui_3112 0.17 -2.4 3,334,469 + Dsui_3112 0.28 -1.3 3,334,514 + Dsui_3112 0.38 -2.2 3,334,522 - -0.3 3,334,580 + Dsui_3112 0.53 -1.3 3,334,650 - Dsui_3112 0.68 -1.3 3,334,686 + Dsui_3112 0.76 +2.3 3,334,741 + Dsui_3112 0.89 -0.7 3,334,752 + -0.3 3,334,752 + -1.3 3,334,850 - -0.3 3,334,851 - +0.7 3,335,200 + Dsui_3113 0.17 +0.7 3,335,239 + Dsui_3113 0.19 -1.6 3,335,414 + Dsui_3113 0.26 -3.0 3,335,463 - Dsui_3113 0.28 -0.3 3,335,586 + Dsui_3113 0.34 -2.6 3,335,605 + Dsui_3113 0.34 +0.7 3,335,733 - Dsui_3113 0.40 +0.7 3,335,803 - +0.7 3,335,803 - -0.3 3,335,834 + Dsui_3113 0.44 -0.3 3,335,850 - Dsui_3113 0.45 +0.7 3,335,850 - -0.3 3,335,852 + Dsui_3113 0.45 -0.9 3,335,888 - Dsui_3113 0.46 -0.3 3,335,906 - +0.7 3,335,940 + Dsui_3113 0.48 -0.3 3,335,958 + Dsui_3113 0.49 -1.0 3,336,137 - -0.3 3,336,180 - Dsui_3113 0.58 +0.7 3,336,241 + Dsui_3113 0.61 -0.9 3,336,261 + Dsui_3113 0.62 -0.0 3,336,485 - Dsui_3113 0.71 +0.7 3,336,487 + Dsui_3113 0.71 -0.9 3,336,526 + +0.7 3,336,628 + Dsui_3113 0.77 -1.7 3,336,654 - Dsui_3113 0.78 -0.3 3,336,794 - Dsui_3113 0.84 +0.7 3,336,895 + Dsui_3113 0.88 +0.7 3,336,903 + Dsui_3113 0.89 +0.7 3,336,956 + -2.7 3,336,956 + -0.9 3,336,991 + -0.9 3,337,050 + -2.3 3,337,060 + +0.7 3,337,164 + -0.3 3,337,383 + Dsui_3114 0.19 -1.9 3,337,413 + Dsui_3114 0.24 -0.3 3,337,426 - -0.3 3,337,445 - -0.3 3,337,468 - +0.7 3,337,518 + Dsui_3114 0.42 -2.3 3,337,784 - Dsui_3114 0.86 -0.3 3,337,825 - -0.3 3,337,850 + +0.7 3,337,860 - -0.9 3,337,965 + Dsui_3115 0.35 -2.5 3,338,083 + Dsui_3115 0.72 -1.3 3,338,099 + +0.7
Or see this region's nucleotide sequence