Strain Fitness in Dechlorosoma suillum PS around Dsui_3113

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3111 and Dsui_3112 are separated by 10 nucleotidesDsui_3112 and Dsui_3113 overlap by 4 nucleotidesDsui_3113 and Dsui_3114 are separated by 96 nucleotidesDsui_3114 and Dsui_3115 overlap by 14 nucleotidesDsui_3115 and Dsui_3116 overlap by 1 nucleotides Dsui_3111: Dsui_3111 - hypothetical protein, at 3,333,042 to 3,334,334 _3111 Dsui_3112: Dsui_3112 - hypothetical protein, at 3,334,345 to 3,334,791 _3112 Dsui_3113: Dsui_3113 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,334,788 to 3,337,169 _3113 Dsui_3114: Dsui_3114 - heme/copper-type cytochrome/quinol oxidase, subunit 3, at 3,337,266 to 3,337,868 _3114 Dsui_3115: Dsui_3115 - hypothetical protein, at 3,337,855 to 3,338,169 _3115 Dsui_3116: Dsui_3116 - ATPase family protein associated with various cellular activities (AAA), at 3,338,169 to 3,338,960 _3116 Position (kb) 3334 3335 3336 3337 3338Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3333.789 kb on - strand, within Dsui_3111at 3334.040 kb on + strand, within Dsui_3111at 3334.067 kb on + strand, within Dsui_3111at 3334.132 kb on + strand, within Dsui_3111at 3334.166 kb on - strandat 3334.182 kb on - strandat 3334.231 kb on - strandat 3334.240 kb on + strandat 3334.421 kb on + strand, within Dsui_3112at 3334.469 kb on + strand, within Dsui_3112at 3334.514 kb on + strand, within Dsui_3112at 3334.522 kb on - strandat 3334.580 kb on + strand, within Dsui_3112at 3334.650 kb on - strand, within Dsui_3112at 3334.686 kb on + strand, within Dsui_3112at 3334.741 kb on + strand, within Dsui_3112at 3334.752 kb on + strandat 3334.752 kb on + strandat 3334.850 kb on - strandat 3334.851 kb on - strandat 3335.200 kb on + strand, within Dsui_3113at 3335.239 kb on + strand, within Dsui_3113at 3335.414 kb on + strand, within Dsui_3113at 3335.463 kb on - strand, within Dsui_3113at 3335.586 kb on + strand, within Dsui_3113at 3335.605 kb on + strand, within Dsui_3113at 3335.733 kb on - strand, within Dsui_3113at 3335.803 kb on - strandat 3335.803 kb on - strandat 3335.834 kb on + strand, within Dsui_3113at 3335.850 kb on - strand, within Dsui_3113at 3335.850 kb on - strandat 3335.852 kb on + strand, within Dsui_3113at 3335.888 kb on - strand, within Dsui_3113at 3335.906 kb on - strandat 3335.940 kb on + strand, within Dsui_3113at 3335.958 kb on + strand, within Dsui_3113at 3336.137 kb on - strandat 3336.180 kb on - strand, within Dsui_3113at 3336.241 kb on + strand, within Dsui_3113at 3336.261 kb on + strand, within Dsui_3113at 3336.485 kb on - strand, within Dsui_3113at 3336.487 kb on + strand, within Dsui_3113at 3336.526 kb on + strandat 3336.628 kb on + strand, within Dsui_3113at 3336.654 kb on - strand, within Dsui_3113at 3336.794 kb on - strand, within Dsui_3113at 3336.895 kb on + strand, within Dsui_3113at 3336.903 kb on + strand, within Dsui_3113at 3336.956 kb on + strandat 3336.956 kb on + strandat 3336.991 kb on + strandat 3337.050 kb on + strandat 3337.060 kb on + strandat 3337.164 kb on + strandat 3337.383 kb on + strand, within Dsui_3114at 3337.413 kb on + strand, within Dsui_3114at 3337.426 kb on - strandat 3337.445 kb on - strandat 3337.468 kb on - strandat 3337.518 kb on + strand, within Dsui_3114at 3337.784 kb on - strand, within Dsui_3114at 3337.825 kb on - strandat 3337.850 kb on + strandat 3337.860 kb on - strandat 3337.965 kb on + strand, within Dsui_3115at 3338.083 kb on + strand, within Dsui_3115at 3338.099 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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3,333,789 - Dsui_3111 0.58 +0.7
3,334,040 + Dsui_3111 0.77 -1.3
3,334,067 + Dsui_3111 0.79 +0.7
3,334,132 + Dsui_3111 0.84 -0.3
3,334,166 - +0.7
3,334,182 - +0.7
3,334,231 - -1.3
3,334,240 + -2.7
3,334,421 + Dsui_3112 0.17 -2.4
3,334,469 + Dsui_3112 0.28 -1.3
3,334,514 + Dsui_3112 0.38 -2.2
3,334,522 - -0.3
3,334,580 + Dsui_3112 0.53 -1.3
3,334,650 - Dsui_3112 0.68 -1.3
3,334,686 + Dsui_3112 0.76 +2.3
3,334,741 + Dsui_3112 0.89 -0.7
3,334,752 + -0.3
3,334,752 + -1.3
3,334,850 - -0.3
3,334,851 - +0.7
3,335,200 + Dsui_3113 0.17 +0.7
3,335,239 + Dsui_3113 0.19 -1.6
3,335,414 + Dsui_3113 0.26 -3.0
3,335,463 - Dsui_3113 0.28 -0.3
3,335,586 + Dsui_3113 0.34 -2.6
3,335,605 + Dsui_3113 0.34 +0.7
3,335,733 - Dsui_3113 0.40 +0.7
3,335,803 - +0.7
3,335,803 - -0.3
3,335,834 + Dsui_3113 0.44 -0.3
3,335,850 - Dsui_3113 0.45 +0.7
3,335,850 - -0.3
3,335,852 + Dsui_3113 0.45 -0.9
3,335,888 - Dsui_3113 0.46 -0.3
3,335,906 - +0.7
3,335,940 + Dsui_3113 0.48 -0.3
3,335,958 + Dsui_3113 0.49 -1.0
3,336,137 - -0.3
3,336,180 - Dsui_3113 0.58 +0.7
3,336,241 + Dsui_3113 0.61 -0.9
3,336,261 + Dsui_3113 0.62 -0.0
3,336,485 - Dsui_3113 0.71 +0.7
3,336,487 + Dsui_3113 0.71 -0.9
3,336,526 + +0.7
3,336,628 + Dsui_3113 0.77 -1.7
3,336,654 - Dsui_3113 0.78 -0.3
3,336,794 - Dsui_3113 0.84 +0.7
3,336,895 + Dsui_3113 0.88 +0.7
3,336,903 + Dsui_3113 0.89 +0.7
3,336,956 + -2.7
3,336,956 + -0.9
3,336,991 + -0.9
3,337,050 + -2.3
3,337,060 + +0.7
3,337,164 + -0.3
3,337,383 + Dsui_3114 0.19 -1.9
3,337,413 + Dsui_3114 0.24 -0.3
3,337,426 - -0.3
3,337,445 - -0.3
3,337,468 - +0.7
3,337,518 + Dsui_3114 0.42 -2.3
3,337,784 - Dsui_3114 0.86 -0.3
3,337,825 - -0.3
3,337,850 + +0.7
3,337,860 - -0.9
3,337,965 + Dsui_3115 0.35 -2.5
3,338,083 + Dsui_3115 0.72 -1.3
3,338,099 + +0.7

Or see this region's nucleotide sequence