Strain Fitness in Dechlorosoma suillum PS around Dsui_3090

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3089 and Dsui_3090 are separated by 286 nucleotidesDsui_3090 and Dsui_3091 are separated by 9 nucleotides Dsui_3089: Dsui_3089 - UDP-2,3-diacylglucosamine hydrolase, at 3,307,447 to 3,308,205 _3089 Dsui_3090: Dsui_3090 - hypothetical protein, at 3,308,492 to 3,308,770 _3090 Dsui_3091: Dsui_3091 - integral membrane protein, TerC family, at 3,308,780 to 3,309,745 _3091 Position (kb) 3308 3309Strain fitness (log2 ratio) -2 -1 0 1at 3308.233 kb on + strandat 3308.247 kb on + strandat 3308.249 kb on - strandat 3308.297 kb on + strandat 3308.459 kb on + strandat 3308.467 kb on - strandat 3308.587 kb on + strand, within Dsui_3090at 3308.620 kb on + strand, within Dsui_3090at 3308.628 kb on - strandat 3308.662 kb on - strandat 3308.854 kb on - strandat 3308.857 kb on - strandat 3308.866 kb on + strandat 3308.903 kb on + strand, within Dsui_3091at 3308.903 kb on + strand, within Dsui_3091at 3308.911 kb on - strandat 3308.925 kb on + strand, within Dsui_3091at 3308.931 kb on + strand, within Dsui_3091at 3309.061 kb on + strand, within Dsui_3091at 3309.115 kb on + strand, within Dsui_3091at 3309.147 kb on + strand, within Dsui_3091at 3309.212 kb on - strandat 3309.235 kb on + strand, within Dsui_3091at 3309.489 kb on - strandat 3309.538 kb on - strand, within Dsui_3091at 3309.592 kb on - strand, within Dsui_3091at 3309.612 kb on + strand, within Dsui_3091

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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3,308,233 + +0.7
3,308,247 + -1.9
3,308,249 - -0.9
3,308,297 + +0.4
3,308,459 + -0.2
3,308,467 - -1.3
3,308,587 + Dsui_3090 0.34 +0.3
3,308,620 + Dsui_3090 0.46 +0.4
3,308,628 - -0.3
3,308,662 - -0.3
3,308,854 - -0.9
3,308,857 - -1.9
3,308,866 + +0.7
3,308,903 + Dsui_3091 0.13 +0.1
3,308,903 + Dsui_3091 0.13 -2.1
3,308,911 - +0.7
3,308,925 + Dsui_3091 0.15 -0.3
3,308,931 + Dsui_3091 0.16 +0.5
3,309,061 + Dsui_3091 0.29 -0.8
3,309,115 + Dsui_3091 0.35 -0.9
3,309,147 + Dsui_3091 0.38 +0.8
3,309,212 - -0.2
3,309,235 + Dsui_3091 0.47 -0.2
3,309,489 - +0.8
3,309,538 - Dsui_3091 0.78 -0.1
3,309,592 - Dsui_3091 0.84 +0.8
3,309,612 + Dsui_3091 0.86 +0.2

Or see this region's nucleotide sequence