Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3006 and Dsui_3007 are separated by 4 nucleotides Dsui_3007 and Dsui_3008 overlap by 1 nucleotides Dsui_3008 and Dsui_3009 are separated by 128 nucleotides
Dsui_3006: Dsui_3006 - (NiFe) hydrogenase assembly chaperone, HybE family, at 3,220,352 to 3,220,969
_3006
Dsui_3007: Dsui_3007 - hydrogenase assembly chaperone HypC/HupF, at 3,220,974 to 3,221,261
_3007
Dsui_3008: Dsui_3008 - hydrogenase expression/formation protein, at 3,221,261 to 3,221,761
_3008
Dsui_3009: Dsui_3009 - Ni,Fe-hydrogenase I large subunit, at 3,221,890 to 3,223,602
_3009
Position (kb)
3221
3222 Strain fitness (log2 ratio)
-2
-1
0
1 at 3220.417 kb on - strand, within Dsui_3006 at 3220.615 kb on - strand, within Dsui_3006 at 3221.107 kb on - strand, within Dsui_3007 at 3221.137 kb on + strand at 3221.246 kb on - strand at 3221.416 kb on - strand, within Dsui_3008 at 3221.445 kb on - strand, within Dsui_3008 at 3221.590 kb on - strand, within Dsui_3008 at 3221.616 kb on - strand, within Dsui_3008 at 3221.657 kb on + strand, within Dsui_3008 at 3221.700 kb on - strand at 3221.700 kb on - strand, within Dsui_3008 at 3221.707 kb on - strand, within Dsui_3008 at 3221.757 kb on - strand at 3221.953 kb on - strand at 3221.969 kb on - strand at 3222.079 kb on + strand at 3222.229 kb on - strand at 3222.361 kb on - strand, within Dsui_3009 at 3222.528 kb on + strand, within Dsui_3009 at 3222.585 kb on + strand at 3222.585 kb on + strand at 3222.662 kb on + strand at 3222.739 kb on - strand, within Dsui_3009
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 3,220,417 - Dsui_3006 0.11 -1.8 3,220,615 - Dsui_3006 0.43 -2.1 3,221,107 - Dsui_3007 0.46 -1.3 3,221,137 + -0.3 3,221,246 - +0.7 3,221,416 - Dsui_3008 0.31 +0.7 3,221,445 - Dsui_3008 0.37 -0.8 3,221,590 - Dsui_3008 0.66 +0.7 3,221,616 - Dsui_3008 0.71 -1.6 3,221,657 + Dsui_3008 0.79 -2.4 3,221,700 - -0.3 3,221,700 - Dsui_3008 0.88 +0.7 3,221,707 - Dsui_3008 0.89 -1.6 3,221,757 - +0.7 3,221,953 - +0.7 3,221,969 - +0.7 3,222,079 + +0.7 3,222,229 - +0.7 3,222,361 - Dsui_3009 0.27 -0.3 3,222,528 + Dsui_3009 0.37 +0.4 3,222,585 + -0.3 3,222,585 + +0.7 3,222,662 + +0.7 3,222,739 - Dsui_3009 0.50 -0.8
Or see this region's nucleotide sequence