Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2956 and Dsui_2957 overlap by 7 nucleotides Dsui_2957 and Dsui_2958 overlap by 4 nucleotides Dsui_2958 and Dsui_2959 are separated by 13 nucleotides Dsui_2959 and Dsui_2960 are separated by 9 nucleotides
Dsui_2956: Dsui_2956 - ABC-type cobalt transport system, periplasmic component, at 3,165,308 to 3,165,679
_2956
Dsui_2957: Dsui_2957 - cobalt ABC transporter, permease protein CbiQ, at 3,165,673 to 3,166,404
_2957
Dsui_2958: Dsui_2958 - cobalt transport protein ATP-binding subunit, at 3,166,401 to 3,167,240
_2958
Dsui_2959: Dsui_2959 - precorrin-4 C11-methyltransferase, at 3,167,254 to 3,168,057
_2959
Dsui_2960: Dsui_2960 - hypothetical protein, at 3,168,067 to 3,169,053
_2960
Position (kb)
3166
3167
3168 Strain fitness (log2 ratio)
-1
0
1 at 3165.575 kb on + strand, within Dsui_2956 at 3165.650 kb on + strand at 3166.105 kb on - strand, within Dsui_2957 at 3166.105 kb on - strand at 3166.154 kb on - strand at 3166.479 kb on - strand at 3166.534 kb on + strand, within Dsui_2958 at 3166.563 kb on - strand at 3166.916 kb on + strand, within Dsui_2958 at 3166.947 kb on + strand, within Dsui_2958 at 3166.947 kb on + strand, within Dsui_2958 at 3166.982 kb on + strand, within Dsui_2958 at 3166.990 kb on - strand at 3167.074 kb on + strand, within Dsui_2958 at 3167.197 kb on + strand at 3167.385 kb on - strand, within Dsui_2959 at 3167.503 kb on + strand, within Dsui_2959 at 3167.580 kb on - strand at 3167.726 kb on + strand, within Dsui_2959 at 3167.741 kb on + strand, within Dsui_2959 at 3167.749 kb on - strand at 3167.841 kb on + strand, within Dsui_2959 at 3167.934 kb on + strand, within Dsui_2959 at 3167.942 kb on - strand, within Dsui_2959 at 3168.011 kb on + strand at 3168.051 kb on - strand at 3168.100 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 3,165,575 + Dsui_2956 0.72 -0.3 3,165,650 + +0.1 3,166,105 - Dsui_2957 0.59 -1.5 3,166,105 - +0.8 3,166,154 - +0.8 3,166,479 - -0.2 3,166,534 + Dsui_2958 0.16 -0.8 3,166,563 - -0.2 3,166,916 + Dsui_2958 0.61 -0.2 3,166,947 + Dsui_2958 0.65 +0.1 3,166,947 + Dsui_2958 0.65 +0.8 3,166,982 + Dsui_2958 0.69 +0.4 3,166,990 - +0.8 3,167,074 + Dsui_2958 0.80 +0.3 3,167,197 + +0.8 3,167,385 - Dsui_2959 0.16 -0.8 3,167,503 + Dsui_2959 0.31 +0.6 3,167,580 - -0.2 3,167,726 + Dsui_2959 0.59 -0.0 3,167,741 + Dsui_2959 0.61 -0.4 3,167,749 - +0.8 3,167,841 + Dsui_2959 0.73 +0.2 3,167,934 + Dsui_2959 0.85 -0.8 3,167,942 - Dsui_2959 0.86 -0.8 3,168,011 + -1.0 3,168,051 - -0.2 3,168,100 - +0.8
Or see this region's nucleotide sequence