Strain Fitness in Dechlorosoma suillum PS around Dsui_2958

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2956 and Dsui_2957 overlap by 7 nucleotidesDsui_2957 and Dsui_2958 overlap by 4 nucleotidesDsui_2958 and Dsui_2959 are separated by 13 nucleotidesDsui_2959 and Dsui_2960 are separated by 9 nucleotides Dsui_2956: Dsui_2956 - ABC-type cobalt transport system, periplasmic component, at 3,165,308 to 3,165,679 _2956 Dsui_2957: Dsui_2957 - cobalt ABC transporter, permease protein CbiQ, at 3,165,673 to 3,166,404 _2957 Dsui_2958: Dsui_2958 - cobalt transport protein ATP-binding subunit, at 3,166,401 to 3,167,240 _2958 Dsui_2959: Dsui_2959 - precorrin-4 C11-methyltransferase, at 3,167,254 to 3,168,057 _2959 Dsui_2960: Dsui_2960 - hypothetical protein, at 3,168,067 to 3,169,053 _2960 Position (kb) 3166 3167 3168Strain fitness (log2 ratio) -1 0 1at 3165.575 kb on + strand, within Dsui_2956at 3165.650 kb on + strandat 3166.105 kb on - strand, within Dsui_2957at 3166.105 kb on - strandat 3166.154 kb on - strandat 3166.479 kb on - strandat 3166.534 kb on + strand, within Dsui_2958at 3166.563 kb on - strandat 3166.916 kb on + strand, within Dsui_2958at 3166.947 kb on + strand, within Dsui_2958at 3166.947 kb on + strand, within Dsui_2958at 3166.982 kb on + strand, within Dsui_2958at 3166.990 kb on - strandat 3167.074 kb on + strand, within Dsui_2958at 3167.197 kb on + strandat 3167.385 kb on - strand, within Dsui_2959at 3167.503 kb on + strand, within Dsui_2959at 3167.580 kb on - strandat 3167.726 kb on + strand, within Dsui_2959at 3167.741 kb on + strand, within Dsui_2959at 3167.749 kb on - strandat 3167.841 kb on + strand, within Dsui_2959at 3167.934 kb on + strand, within Dsui_2959at 3167.942 kb on - strand, within Dsui_2959at 3168.011 kb on + strandat 3168.051 kb on - strandat 3168.100 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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3,165,575 + Dsui_2956 0.72 -0.3
3,165,650 + +0.1
3,166,105 - Dsui_2957 0.59 -1.5
3,166,105 - +0.8
3,166,154 - +0.8
3,166,479 - -0.2
3,166,534 + Dsui_2958 0.16 -0.8
3,166,563 - -0.2
3,166,916 + Dsui_2958 0.61 -0.2
3,166,947 + Dsui_2958 0.65 +0.1
3,166,947 + Dsui_2958 0.65 +0.8
3,166,982 + Dsui_2958 0.69 +0.4
3,166,990 - +0.8
3,167,074 + Dsui_2958 0.80 +0.3
3,167,197 + +0.8
3,167,385 - Dsui_2959 0.16 -0.8
3,167,503 + Dsui_2959 0.31 +0.6
3,167,580 - -0.2
3,167,726 + Dsui_2959 0.59 -0.0
3,167,741 + Dsui_2959 0.61 -0.4
3,167,749 - +0.8
3,167,841 + Dsui_2959 0.73 +0.2
3,167,934 + Dsui_2959 0.85 -0.8
3,167,942 - Dsui_2959 0.86 -0.8
3,168,011 + -1.0
3,168,051 - -0.2
3,168,100 - +0.8

Or see this region's nucleotide sequence