Strain Fitness in Dechlorosoma suillum PS around Dsui_2858

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2856 and Dsui_2857 are separated by 101 nucleotidesDsui_2857 and Dsui_2858 overlap by 8 nucleotidesDsui_2858 and Dsui_2859 are separated by 227 nucleotides Dsui_2856: Dsui_2856 - methyl-accepting chemotaxis protein, at 3,044,547 to 3,046,568 _2856 Dsui_2857: Dsui_2857 - lipoprotein releasing system, ATP-binding protein, at 3,046,670 to 3,047,419 _2857 Dsui_2858: Dsui_2858 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 3,047,412 to 3,048,659 _2858 Dsui_2859: Dsui_2859 - hypothetical protein, at 3,048,887 to 3,049,954 _2859 Position (kb) 3047 3048 3049Strain fitness (log2 ratio) -1 0 1at 3046.461 kb on + strandat 3046.518 kb on + strandat 3046.530 kb on + strandat 3046.538 kb on - strandat 3046.538 kb on - strandat 3046.585 kb on - strandat 3046.590 kb on - strandat 3046.590 kb on - strandat 3047.417 kb on - strandat 3048.661 kb on - strandat 3048.661 kb on - strandat 3048.784 kb on - strandat 3048.836 kb on - strandat 3048.873 kb on + strandat 3048.877 kb on + strandat 3048.877 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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3,046,461 + -0.2
3,046,518 + -0.2
3,046,530 + -0.7
3,046,538 - -0.1
3,046,538 - -0.5
3,046,585 - +0.1
3,046,590 - -0.3
3,046,590 - -0.3
3,047,417 - +0.0
3,048,661 - -1.0
3,048,661 - +0.0
3,048,784 - -1.2
3,048,836 - +0.8
3,048,873 + +0.1
3,048,877 + -0.1
3,048,877 + +0.0

Or see this region's nucleotide sequence