Strain Fitness in Dechlorosoma suillum PS around Dsui_2815

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2814 and Dsui_2815 are separated by 256 nucleotidesDsui_2815 and Dsui_2816 are separated by 110 nucleotides Dsui_2814: Dsui_2814 - polyphosphate kinase 1, at 2,988,455 to 2,990,563 _2814 Dsui_2815: Dsui_2815 - putative flavoprotein, at 2,990,820 to 2,991,386 _2815 Dsui_2816: Dsui_2816 - (p)ppGpp synthetase, RelA/SpoT family, at 2,991,497 to 2,993,719 _2816 Position (kb) 2990 2991 2992Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2989.890 kb on + strand, within Dsui_2814at 2989.897 kb on + strand, within Dsui_2814at 2989.905 kb on - strand, within Dsui_2814at 2989.921 kb on - strand, within Dsui_2814at 2989.987 kb on + strand, within Dsui_2814at 2989.994 kb on + strand, within Dsui_2814at 2989.995 kb on - strand, within Dsui_2814at 2990.018 kb on + strand, within Dsui_2814at 2990.019 kb on + strand, within Dsui_2814at 2990.071 kb on + strand, within Dsui_2814at 2990.071 kb on + strand, within Dsui_2814at 2990.071 kb on + strand, within Dsui_2814at 2990.079 kb on - strand, within Dsui_2814at 2990.197 kb on - strand, within Dsui_2814at 2990.428 kb on - strandat 2990.436 kb on - strandat 2990.512 kb on + strandat 2990.697 kb on + strandat 2990.747 kb on + strandat 2990.747 kb on + strandat 2990.755 kb on - strandat 2990.755 kb on - strandat 2990.798 kb on - strandat 2990.853 kb on - strandat 2990.871 kb on - strandat 2990.916 kb on + strand, within Dsui_2815at 2991.015 kb on + strand, within Dsui_2815at 2991.118 kb on + strand, within Dsui_2815at 2991.219 kb on + strand, within Dsui_2815at 2991.227 kb on - strand, within Dsui_2815at 2991.262 kb on - strand, within Dsui_2815at 2991.296 kb on + strand, within Dsui_2815at 2991.363 kb on + strandat 2991.388 kb on - strandat 2991.468 kb on - strandat 2991.570 kb on - strandat 2991.804 kb on - strand, within Dsui_2816at 2991.836 kb on - strand, within Dsui_2816at 2992.278 kb on - strand, within Dsui_2816at 2992.349 kb on - strand, within Dsui_2816

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,989,890 + Dsui_2814 0.68 +1.0
2,989,897 + Dsui_2814 0.68 -1.4
2,989,905 - Dsui_2814 0.69 -1.1
2,989,921 - Dsui_2814 0.70 +0.9
2,989,987 + Dsui_2814 0.73 -0.5
2,989,994 + Dsui_2814 0.73 -0.7
2,989,995 - Dsui_2814 0.73 +0.9
2,990,018 + Dsui_2814 0.74 +0.2
2,990,019 + Dsui_2814 0.74 +0.1
2,990,071 + Dsui_2814 0.77 -3.0
2,990,071 + Dsui_2814 0.77 +0.2
2,990,071 + Dsui_2814 0.77 -0.2
2,990,079 - Dsui_2814 0.77 -0.1
2,990,197 - Dsui_2814 0.83 -0.7
2,990,428 - +0.9
2,990,436 - -1.9
2,990,512 + +0.4
2,990,697 + -1.9
2,990,747 + -0.7
2,990,747 + +0.9
2,990,755 - -0.1
2,990,755 - +0.9
2,990,798 - +0.9
2,990,853 - -1.1
2,990,871 - -0.7
2,990,916 + Dsui_2815 0.17 -0.4
2,991,015 + Dsui_2815 0.34 -0.7
2,991,118 + Dsui_2815 0.53 -1.4
2,991,219 + Dsui_2815 0.70 -0.3
2,991,227 - Dsui_2815 0.72 +0.9
2,991,262 - Dsui_2815 0.78 -0.7
2,991,296 + Dsui_2815 0.84 -1.1
2,991,363 + +1.9
2,991,388 - -1.9
2,991,468 - +0.2
2,991,570 - -3.3
2,991,804 - Dsui_2816 0.14 -1.9
2,991,836 - Dsui_2816 0.15 -3.2
2,992,278 - Dsui_2816 0.35 -3.7
2,992,349 - Dsui_2816 0.38 -3.3

Or see this region's nucleotide sequence