Strain Fitness in Dechlorosoma suillum PS around Dsui_2705

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2704 and Dsui_2705 are separated by 106 nucleotidesDsui_2705 and Dsui_2706 are separated by 7 nucleotidesDsui_2706 and Dsui_2707 are separated by 21 nucleotides Dsui_2704: Dsui_2704 - yecA family protein, at 2,860,914 to 2,861,612 _2704 Dsui_2705: Dsui_2705 - permease, at 2,861,719 to 2,863,008 _2705 Dsui_2706: Dsui_2706 - adenine phosphoribosyltransferase, at 2,863,016 to 2,863,543 _2706 Dsui_2707: Dsui_2707 - putative permease, at 2,863,565 to 2,864,470 _2707 Position (kb) 2861 2862 2863 2864Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2860.899 kb on + strandat 2860.907 kb on - strandat 2860.950 kb on + strandat 2861.079 kb on + strand, within Dsui_2704at 2861.093 kb on - strandat 2861.404 kb on + strand, within Dsui_2704at 2861.426 kb on + strand, within Dsui_2704at 2861.584 kb on + strandat 2861.627 kb on - strandat 2861.627 kb on - strandat 2861.657 kb on + strandat 2861.746 kb on + strandat 2861.751 kb on + strandat 2861.792 kb on - strandat 2862.036 kb on - strandat 2862.329 kb on + strandat 2862.456 kb on - strandat 2862.573 kb on + strand, within Dsui_2705at 2862.593 kb on + strand, within Dsui_2705at 2862.736 kb on + strand, within Dsui_2705at 2862.765 kb on + strand, within Dsui_2705at 2862.835 kb on - strandat 2862.948 kb on + strandat 2862.978 kb on + strandat 2863.002 kb on + strandat 2863.002 kb on + strandat 2863.002 kb on + strandat 2863.002 kb on + strandat 2863.010 kb on - strandat 2863.010 kb on - strandat 2863.010 kb on - strandat 2863.010 kb on - strandat 2863.010 kb on - strandat 2863.010 kb on - strandat 2863.013 kb on + strandat 2863.015 kb on + strandat 2863.063 kb on + strandat 2863.082 kb on - strandat 2863.097 kb on + strand, within Dsui_2706at 2863.155 kb on + strand, within Dsui_2706at 2863.217 kb on + strand, within Dsui_2706at 2863.225 kb on - strandat 2863.268 kb on + strand, within Dsui_2706at 2863.294 kb on + strandat 2863.294 kb on + strand, within Dsui_2706at 2863.341 kb on - strand, within Dsui_2706at 2863.483 kb on + strand, within Dsui_2706at 2863.529 kb on - strandat 2863.631 kb on - strandat 2863.740 kb on + strandat 2863.759 kb on + strand, within Dsui_2707at 2863.772 kb on - strand, within Dsui_2707at 2863.844 kb on + strand, within Dsui_2707at 2863.926 kb on + strand, within Dsui_2707at 2863.934 kb on - strandat 2863.948 kb on + strandat 2863.971 kb on - strand, within Dsui_2707

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,860,899 + +0.3
2,860,907 - +0.8
2,860,950 + -0.6
2,861,079 + Dsui_2704 0.24 -0.6
2,861,093 - -1.2
2,861,404 + Dsui_2704 0.70 -1.8
2,861,426 + Dsui_2704 0.73 -0.8
2,861,584 + -0.4
2,861,627 - +0.8
2,861,627 - -0.2
2,861,657 + +0.2
2,861,746 + +0.6
2,861,751 + -0.2
2,861,792 - +0.8
2,862,036 - +0.8
2,862,329 + +0.8
2,862,456 - -0.8
2,862,573 + Dsui_2705 0.66 -2.4
2,862,593 + Dsui_2705 0.68 -1.2
2,862,736 + Dsui_2705 0.79 -0.9
2,862,765 + Dsui_2705 0.81 -0.8
2,862,835 - -0.2
2,862,948 + -0.2
2,862,978 + -0.2
2,863,002 + -1.2
2,863,002 + +0.8
2,863,002 + +0.8
2,863,002 + -0.2
2,863,010 - +0.8
2,863,010 - -0.2
2,863,010 - +0.8
2,863,010 - -0.8
2,863,010 - +0.8
2,863,010 - -1.2
2,863,013 + -0.9
2,863,015 + -1.2
2,863,063 + -1.1
2,863,082 - -0.8
2,863,097 + Dsui_2706 0.15 +0.4
2,863,155 + Dsui_2706 0.26 -1.2
2,863,217 + Dsui_2706 0.38 -0.8
2,863,225 - +0.8
2,863,268 + Dsui_2706 0.48 +2.8
2,863,294 + +0.8
2,863,294 + Dsui_2706 0.53 +0.2
2,863,341 - Dsui_2706 0.62 -0.2
2,863,483 + Dsui_2706 0.88 -0.2
2,863,529 - -2.7
2,863,631 - -0.2
2,863,740 + +0.8
2,863,759 + Dsui_2707 0.21 +0.8
2,863,772 - Dsui_2707 0.23 -0.2
2,863,844 + Dsui_2707 0.31 +0.8
2,863,926 + Dsui_2707 0.40 -0.8
2,863,934 - +0.8
2,863,948 + +0.8
2,863,971 - Dsui_2707 0.45 +0.8

Or see this region's nucleotide sequence