Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2605 and Dsui_2606 are separated by 28 nucleotides Dsui_2606 and Dsui_2607 overlap by 4 nucleotides Dsui_2607 and Dsui_2608 are separated by 22 nucleotides Dsui_2608 and Dsui_2609 are separated by 9 nucleotides Dsui_2609 and Dsui_2610 are separated by 78 nucleotides Dsui_2610 and Dsui_2611 are separated by 7 nucleotides
Dsui_2605: Dsui_2605 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,759,672 to 2,761,408
_2605
Dsui_2606: Dsui_2606 - soluble lytic murein transglycosylase-like protein, at 2,761,437 to 2,761,913
_2606
Dsui_2607: Dsui_2607 - hypothetical protein, at 2,761,910 to 2,762,131
_2607
Dsui_2608: Dsui_2608 - topoisomerase IA, at 2,762,154 to 2,764,610
_2608
Dsui_2609: Dsui_2609 - hypothetical protein, at 2,764,620 to 2,764,883
_2609
Dsui_2610: Dsui_2610 - single-stranded DNA-binding protein, at 2,764,962 to 2,765,330
_2610
Dsui_2611: Dsui_2611 - hypothetical protein, at 2,765,338 to 2,765,667
_2611
Position (kb)
2762
2763
2764
2765 Strain fitness (log2 ratio)
-2
-1
0
1 at 2761.170 kb on - strand, within Dsui_2605 at 2761.249 kb on - strand at 2761.259 kb on - strand at 2761.513 kb on + strand, within Dsui_2606 at 2761.595 kb on - strand, within Dsui_2606 at 2761.634 kb on + strand, within Dsui_2606 at 2761.642 kb on - strand, within Dsui_2606 at 2761.891 kb on + strand at 2761.891 kb on + strand at 2762.067 kb on + strand, within Dsui_2607 at 2762.082 kb on + strand, within Dsui_2607 at 2762.140 kb on + strand at 2762.149 kb on - strand at 2762.163 kb on + strand at 2762.232 kb on + strand at 2762.298 kb on - strand at 2762.298 kb on - strand at 2762.379 kb on + strand at 2762.464 kb on + strand, within Dsui_2608 at 2762.561 kb on - strand, within Dsui_2608 at 2762.598 kb on + strand, within Dsui_2608 at 2762.606 kb on - strand, within Dsui_2608 at 2762.740 kb on + strand, within Dsui_2608 at 2762.740 kb on + strand, within Dsui_2608 at 2762.754 kb on - strand, within Dsui_2608 at 2762.766 kb on - strand, within Dsui_2608 at 2762.883 kb on + strand, within Dsui_2608 at 2762.985 kb on + strand, within Dsui_2608 at 2762.989 kb on - strand, within Dsui_2608 at 2763.178 kb on + strand at 2763.186 kb on - strand, within Dsui_2608 at 2763.351 kb on - strand, within Dsui_2608 at 2763.636 kb on + strand, within Dsui_2608 at 2763.644 kb on - strand, within Dsui_2608 at 2763.793 kb on - strand, within Dsui_2608 at 2763.798 kb on - strand, within Dsui_2608 at 2763.832 kb on + strand, within Dsui_2608 at 2763.913 kb on + strand, within Dsui_2608 at 2764.087 kb on - strand, within Dsui_2608 at 2764.109 kb on + strand, within Dsui_2608 at 2764.144 kb on + strand, within Dsui_2608 at 2764.158 kb on + strand, within Dsui_2608 at 2764.246 kb on - strand, within Dsui_2608 at 2764.252 kb on - strand, within Dsui_2608 at 2764.657 kb on + strand, within Dsui_2609 at 2764.727 kb on - strand, within Dsui_2609 at 2764.755 kb on - strand, within Dsui_2609 at 2764.797 kb on + strand, within Dsui_2609 at 2764.806 kb on + strand at 2764.845 kb on + strand, within Dsui_2609 at 2764.853 kb on - strand, within Dsui_2609 at 2764.853 kb on - strand, within Dsui_2609 at 2764.853 kb on - strand at 2764.994 kb on - strand at 2765.068 kb on - strand, within Dsui_2610 at 2765.125 kb on - strand, within Dsui_2610 at 2765.178 kb on - strand, within Dsui_2610 at 2765.193 kb on - strand at 2765.195 kb on + strand, within Dsui_2610 at 2765.254 kb on - strand, within Dsui_2610 at 2765.425 kb on - strand, within Dsui_2611 at 2765.425 kb on - strand, within Dsui_2611 at 2765.425 kb on - strand, within Dsui_2611 at 2765.427 kb on + strand at 2765.474 kb on - strand, within Dsui_2611 at 2765.564 kb on - strand, within Dsui_2611
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,761,170 - Dsui_2605 0.86 -0.9 2,761,249 - -0.9 2,761,259 - -0.3 2,761,513 + Dsui_2606 0.16 -0.9 2,761,595 - Dsui_2606 0.33 +0.7 2,761,634 + Dsui_2606 0.41 +0.7 2,761,642 - Dsui_2606 0.43 +0.7 2,761,891 + -0.3 2,761,891 + +0.7 2,762,067 + Dsui_2607 0.71 -0.9 2,762,082 + Dsui_2607 0.77 -0.9 2,762,140 + -0.9 2,762,149 - +0.7 2,762,163 + -0.3 2,762,232 + -1.3 2,762,298 - -1.3 2,762,298 - +0.7 2,762,379 + -0.9 2,762,464 + Dsui_2608 0.13 +0.7 2,762,561 - Dsui_2608 0.17 +0.7 2,762,598 + Dsui_2608 0.18 +0.7 2,762,606 - Dsui_2608 0.18 +0.7 2,762,740 + Dsui_2608 0.24 +0.7 2,762,740 + Dsui_2608 0.24 +0.7 2,762,754 - Dsui_2608 0.24 -0.9 2,762,766 - Dsui_2608 0.25 +0.7 2,762,883 + Dsui_2608 0.30 -0.3 2,762,985 + Dsui_2608 0.34 -0.3 2,762,989 - Dsui_2608 0.34 -0.9 2,763,178 + +0.7 2,763,186 - Dsui_2608 0.42 +0.7 2,763,351 - Dsui_2608 0.49 +0.7 2,763,636 + Dsui_2608 0.60 -1.6 2,763,644 - Dsui_2608 0.61 +0.7 2,763,793 - Dsui_2608 0.67 +0.7 2,763,798 - Dsui_2608 0.67 +0.7 2,763,832 + Dsui_2608 0.68 +0.7 2,763,913 + Dsui_2608 0.72 -0.9 2,764,087 - Dsui_2608 0.79 +0.7 2,764,109 + Dsui_2608 0.80 +0.7 2,764,144 + Dsui_2608 0.81 +0.7 2,764,158 + Dsui_2608 0.82 +0.7 2,764,246 - Dsui_2608 0.85 -0.3 2,764,252 - Dsui_2608 0.85 -0.3 2,764,657 + Dsui_2609 0.14 +0.7 2,764,727 - Dsui_2609 0.41 +0.7 2,764,755 - Dsui_2609 0.51 +0.7 2,764,797 + Dsui_2609 0.67 +0.7 2,764,806 + +0.7 2,764,845 + Dsui_2609 0.85 -0.3 2,764,853 - Dsui_2609 0.88 +0.7 2,764,853 - Dsui_2609 0.88 +0.7 2,764,853 - +0.7 2,764,994 - -0.3 2,765,068 - Dsui_2610 0.29 -1.9 2,765,125 - Dsui_2610 0.44 -0.9 2,765,178 - Dsui_2610 0.59 +0.7 2,765,193 - +0.7 2,765,195 + Dsui_2610 0.63 +0.7 2,765,254 - Dsui_2610 0.79 -0.3 2,765,425 - Dsui_2611 0.26 +0.7 2,765,425 - Dsui_2611 0.26 +0.7 2,765,425 - Dsui_2611 0.26 +0.7 2,765,427 + +0.7 2,765,474 - Dsui_2611 0.41 +0.7 2,765,564 - Dsui_2611 0.68 +0.7
Or see this region's nucleotide sequence