Strain Fitness in Dechlorosoma suillum PS around Dsui_2608

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2605 and Dsui_2606 are separated by 28 nucleotidesDsui_2606 and Dsui_2607 overlap by 4 nucleotidesDsui_2607 and Dsui_2608 are separated by 22 nucleotidesDsui_2608 and Dsui_2609 are separated by 9 nucleotidesDsui_2609 and Dsui_2610 are separated by 78 nucleotidesDsui_2610 and Dsui_2611 are separated by 7 nucleotides Dsui_2605: Dsui_2605 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,759,672 to 2,761,408 _2605 Dsui_2606: Dsui_2606 - soluble lytic murein transglycosylase-like protein, at 2,761,437 to 2,761,913 _2606 Dsui_2607: Dsui_2607 - hypothetical protein, at 2,761,910 to 2,762,131 _2607 Dsui_2608: Dsui_2608 - topoisomerase IA, at 2,762,154 to 2,764,610 _2608 Dsui_2609: Dsui_2609 - hypothetical protein, at 2,764,620 to 2,764,883 _2609 Dsui_2610: Dsui_2610 - single-stranded DNA-binding protein, at 2,764,962 to 2,765,330 _2610 Dsui_2611: Dsui_2611 - hypothetical protein, at 2,765,338 to 2,765,667 _2611 Position (kb) 2762 2763 2764 2765Strain fitness (log2 ratio) -2 -1 0 1at 2761.170 kb on - strand, within Dsui_2605at 2761.249 kb on - strandat 2761.259 kb on - strandat 2761.513 kb on + strand, within Dsui_2606at 2761.595 kb on - strand, within Dsui_2606at 2761.634 kb on + strand, within Dsui_2606at 2761.642 kb on - strand, within Dsui_2606at 2761.891 kb on + strandat 2761.891 kb on + strandat 2762.067 kb on + strand, within Dsui_2607at 2762.082 kb on + strand, within Dsui_2607at 2762.140 kb on + strandat 2762.149 kb on - strandat 2762.163 kb on + strandat 2762.232 kb on + strandat 2762.298 kb on - strandat 2762.298 kb on - strandat 2762.379 kb on + strandat 2762.464 kb on + strand, within Dsui_2608at 2762.561 kb on - strand, within Dsui_2608at 2762.598 kb on + strand, within Dsui_2608at 2762.606 kb on - strand, within Dsui_2608at 2762.740 kb on + strand, within Dsui_2608at 2762.740 kb on + strand, within Dsui_2608at 2762.754 kb on - strand, within Dsui_2608at 2762.766 kb on - strand, within Dsui_2608at 2762.883 kb on + strand, within Dsui_2608at 2762.985 kb on + strand, within Dsui_2608at 2762.989 kb on - strand, within Dsui_2608at 2763.178 kb on + strandat 2763.186 kb on - strand, within Dsui_2608at 2763.351 kb on - strand, within Dsui_2608at 2763.636 kb on + strand, within Dsui_2608at 2763.644 kb on - strand, within Dsui_2608at 2763.793 kb on - strand, within Dsui_2608at 2763.798 kb on - strand, within Dsui_2608at 2763.832 kb on + strand, within Dsui_2608at 2763.913 kb on + strand, within Dsui_2608at 2764.087 kb on - strand, within Dsui_2608at 2764.109 kb on + strand, within Dsui_2608at 2764.144 kb on + strand, within Dsui_2608at 2764.158 kb on + strand, within Dsui_2608at 2764.246 kb on - strand, within Dsui_2608at 2764.252 kb on - strand, within Dsui_2608at 2764.657 kb on + strand, within Dsui_2609at 2764.727 kb on - strand, within Dsui_2609at 2764.755 kb on - strand, within Dsui_2609at 2764.797 kb on + strand, within Dsui_2609at 2764.806 kb on + strandat 2764.845 kb on + strand, within Dsui_2609at 2764.853 kb on - strand, within Dsui_2609at 2764.853 kb on - strand, within Dsui_2609at 2764.853 kb on - strandat 2764.994 kb on - strandat 2765.068 kb on - strand, within Dsui_2610at 2765.125 kb on - strand, within Dsui_2610at 2765.178 kb on - strand, within Dsui_2610at 2765.193 kb on - strandat 2765.195 kb on + strand, within Dsui_2610at 2765.254 kb on - strand, within Dsui_2610at 2765.425 kb on - strand, within Dsui_2611at 2765.425 kb on - strand, within Dsui_2611at 2765.425 kb on - strand, within Dsui_2611at 2765.427 kb on + strandat 2765.474 kb on - strand, within Dsui_2611at 2765.564 kb on - strand, within Dsui_2611

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,761,170 - Dsui_2605 0.86 -0.9
2,761,249 - -0.9
2,761,259 - -0.3
2,761,513 + Dsui_2606 0.16 -0.9
2,761,595 - Dsui_2606 0.33 +0.7
2,761,634 + Dsui_2606 0.41 +0.7
2,761,642 - Dsui_2606 0.43 +0.7
2,761,891 + -0.3
2,761,891 + +0.7
2,762,067 + Dsui_2607 0.71 -0.9
2,762,082 + Dsui_2607 0.77 -0.9
2,762,140 + -0.9
2,762,149 - +0.7
2,762,163 + -0.3
2,762,232 + -1.3
2,762,298 - -1.3
2,762,298 - +0.7
2,762,379 + -0.9
2,762,464 + Dsui_2608 0.13 +0.7
2,762,561 - Dsui_2608 0.17 +0.7
2,762,598 + Dsui_2608 0.18 +0.7
2,762,606 - Dsui_2608 0.18 +0.7
2,762,740 + Dsui_2608 0.24 +0.7
2,762,740 + Dsui_2608 0.24 +0.7
2,762,754 - Dsui_2608 0.24 -0.9
2,762,766 - Dsui_2608 0.25 +0.7
2,762,883 + Dsui_2608 0.30 -0.3
2,762,985 + Dsui_2608 0.34 -0.3
2,762,989 - Dsui_2608 0.34 -0.9
2,763,178 + +0.7
2,763,186 - Dsui_2608 0.42 +0.7
2,763,351 - Dsui_2608 0.49 +0.7
2,763,636 + Dsui_2608 0.60 -1.6
2,763,644 - Dsui_2608 0.61 +0.7
2,763,793 - Dsui_2608 0.67 +0.7
2,763,798 - Dsui_2608 0.67 +0.7
2,763,832 + Dsui_2608 0.68 +0.7
2,763,913 + Dsui_2608 0.72 -0.9
2,764,087 - Dsui_2608 0.79 +0.7
2,764,109 + Dsui_2608 0.80 +0.7
2,764,144 + Dsui_2608 0.81 +0.7
2,764,158 + Dsui_2608 0.82 +0.7
2,764,246 - Dsui_2608 0.85 -0.3
2,764,252 - Dsui_2608 0.85 -0.3
2,764,657 + Dsui_2609 0.14 +0.7
2,764,727 - Dsui_2609 0.41 +0.7
2,764,755 - Dsui_2609 0.51 +0.7
2,764,797 + Dsui_2609 0.67 +0.7
2,764,806 + +0.7
2,764,845 + Dsui_2609 0.85 -0.3
2,764,853 - Dsui_2609 0.88 +0.7
2,764,853 - Dsui_2609 0.88 +0.7
2,764,853 - +0.7
2,764,994 - -0.3
2,765,068 - Dsui_2610 0.29 -1.9
2,765,125 - Dsui_2610 0.44 -0.9
2,765,178 - Dsui_2610 0.59 +0.7
2,765,193 - +0.7
2,765,195 + Dsui_2610 0.63 +0.7
2,765,254 - Dsui_2610 0.79 -0.3
2,765,425 - Dsui_2611 0.26 +0.7
2,765,425 - Dsui_2611 0.26 +0.7
2,765,425 - Dsui_2611 0.26 +0.7
2,765,427 + +0.7
2,765,474 - Dsui_2611 0.41 +0.7
2,765,564 - Dsui_2611 0.68 +0.7

Or see this region's nucleotide sequence