Strain Fitness in Dechlorosoma suillum PS around Dsui_2592

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2591 and Dsui_2592 overlap by 1 nucleotidesDsui_2592 and Dsui_2593 are separated by 27 nucleotidesDsui_2593 and Dsui_2594 are separated by 12 nucleotides Dsui_2591: Dsui_2591 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 2,746,022 to 2,747,608 _2591 Dsui_2592: Dsui_2592 - type II secretory pathway, component PulF, at 2,747,608 to 2,748,720 _2592 Dsui_2593: Dsui_2593 - PilS N terminal protein, at 2,748,748 to 2,749,287 _2593 Dsui_2594: Dsui_2594 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 2,749,300 to 2,750,256 _2594 Position (kb) 2747 2748 2749Strain fitness (log2 ratio) -3 -2 -1 0 1at 2746.611 kb on - strand, within Dsui_2591at 2746.761 kb on + strand, within Dsui_2591at 2746.788 kb on - strand, within Dsui_2591at 2746.802 kb on + strandat 2746.805 kb on - strand, within Dsui_2591at 2746.887 kb on - strand, within Dsui_2591at 2746.889 kb on + strand, within Dsui_2591at 2746.907 kb on + strand, within Dsui_2591at 2746.928 kb on - strand, within Dsui_2591at 2746.974 kb on - strand, within Dsui_2591at 2747.118 kb on + strand, within Dsui_2591at 2747.157 kb on + strand, within Dsui_2591at 2747.405 kb on - strand, within Dsui_2591at 2747.534 kb on - strandat 2747.713 kb on + strandat 2747.721 kb on - strand, within Dsui_2592at 2747.746 kb on - strand, within Dsui_2592at 2747.771 kb on - strand, within Dsui_2592at 2747.801 kb on - strand, within Dsui_2592at 2747.989 kb on + strand, within Dsui_2592at 2748.044 kb on - strand, within Dsui_2592at 2748.044 kb on - strand, within Dsui_2592at 2748.046 kb on + strand, within Dsui_2592at 2748.065 kb on - strand, within Dsui_2592at 2748.084 kb on + strand, within Dsui_2592at 2748.261 kb on - strand, within Dsui_2592at 2748.314 kb on - strand, within Dsui_2592at 2748.314 kb on - strand, within Dsui_2592at 2748.324 kb on - strand, within Dsui_2592at 2748.334 kb on + strand, within Dsui_2592at 2748.357 kb on + strand, within Dsui_2592at 2748.373 kb on - strand, within Dsui_2592at 2748.487 kb on - strand, within Dsui_2592at 2748.638 kb on - strandat 2748.658 kb on - strandat 2748.669 kb on - strandat 2748.678 kb on + strandat 2748.683 kb on + strandat 2748.720 kb on + strandat 2748.818 kb on - strand, within Dsui_2593at 2748.820 kb on - strand, within Dsui_2593at 2748.834 kb on + strand, within Dsui_2593at 2748.842 kb on - strand, within Dsui_2593at 2748.882 kb on + strand, within Dsui_2593at 2748.890 kb on - strand, within Dsui_2593at 2748.890 kb on - strand, within Dsui_2593at 2748.890 kb on - strand, within Dsui_2593at 2748.895 kb on - strand, within Dsui_2593at 2749.105 kb on + strand, within Dsui_2593at 2749.126 kb on + strand, within Dsui_2593at 2749.199 kb on - strandat 2749.210 kb on + strand, within Dsui_2593at 2749.210 kb on + strand, within Dsui_2593at 2749.218 kb on - strand, within Dsui_2593at 2749.235 kb on - strandat 2749.309 kb on + strandat 2749.392 kb on + strandat 2749.400 kb on - strand, within Dsui_2594at 2749.580 kb on + strand, within Dsui_2594at 2749.704 kb on + strand, within Dsui_2594

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,746,611 - Dsui_2591 0.37 +0.7
2,746,761 + Dsui_2591 0.47 +1.7
2,746,788 - Dsui_2591 0.48 -0.3
2,746,802 + +0.7
2,746,805 - Dsui_2591 0.49 -0.3
2,746,887 - Dsui_2591 0.55 -1.6
2,746,889 + Dsui_2591 0.55 +0.7
2,746,907 + Dsui_2591 0.56 -0.9
2,746,928 - Dsui_2591 0.57 -0.9
2,746,974 - Dsui_2591 0.60 -0.3
2,747,118 + Dsui_2591 0.69 +0.7
2,747,157 + Dsui_2591 0.72 +0.7
2,747,405 - Dsui_2591 0.87 +0.7
2,747,534 - -0.3
2,747,713 + +0.7
2,747,721 - Dsui_2592 0.10 +0.7
2,747,746 - Dsui_2592 0.12 +0.7
2,747,771 - Dsui_2592 0.15 -0.9
2,747,801 - Dsui_2592 0.17 +0.7
2,747,989 + Dsui_2592 0.34 -0.3
2,748,044 - Dsui_2592 0.39 +0.7
2,748,044 - Dsui_2592 0.39 +0.7
2,748,046 + Dsui_2592 0.39 +0.7
2,748,065 - Dsui_2592 0.41 -0.3
2,748,084 + Dsui_2592 0.43 -0.3
2,748,261 - Dsui_2592 0.59 +0.7
2,748,314 - Dsui_2592 0.63 +0.7
2,748,314 - Dsui_2592 0.63 -0.9
2,748,324 - Dsui_2592 0.64 -1.3
2,748,334 + Dsui_2592 0.65 +0.7
2,748,357 + Dsui_2592 0.67 -0.3
2,748,373 - Dsui_2592 0.69 +0.7
2,748,487 - Dsui_2592 0.79 +0.7
2,748,638 - +0.7
2,748,658 - -0.3
2,748,669 - -0.3
2,748,678 + +0.7
2,748,683 + -1.3
2,748,720 + -0.3
2,748,818 - Dsui_2593 0.13 -0.3
2,748,820 - Dsui_2593 0.13 -0.3
2,748,834 + Dsui_2593 0.16 -0.3
2,748,842 - Dsui_2593 0.17 +0.7
2,748,882 + Dsui_2593 0.25 +0.7
2,748,890 - Dsui_2593 0.26 +0.7
2,748,890 - Dsui_2593 0.26 -1.6
2,748,890 - Dsui_2593 0.26 +0.7
2,748,895 - Dsui_2593 0.27 -0.3
2,749,105 + Dsui_2593 0.66 +0.7
2,749,126 + Dsui_2593 0.70 -1.3
2,749,199 - +0.7
2,749,210 + Dsui_2593 0.86 +0.7
2,749,210 + Dsui_2593 0.86 -0.3
2,749,218 - Dsui_2593 0.87 -0.9
2,749,235 - -0.3
2,749,309 + -0.3
2,749,392 + -0.9
2,749,400 - Dsui_2594 0.10 +0.7
2,749,580 + Dsui_2594 0.29 -3.3
2,749,704 + Dsui_2594 0.42 -0.3

Or see this region's nucleotide sequence