Strain Fitness in Dechlorosoma suillum PS around Dsui_2587

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2585 and Dsui_2586 overlap by 4 nucleotidesDsui_2586 and Dsui_2587 are separated by 1 nucleotidesDsui_2587 and Dsui_2588 are separated by 22 nucleotidesDsui_2588 and Dsui_2589 are separated by 10 nucleotides Dsui_2585: Dsui_2585 - type IV secretory pathway, component VirB8, at 2,738,371 to 2,739,075 _2585 Dsui_2586: Dsui_2586 - type IV secretory pathway, VirB9 component, at 2,739,072 to 2,740,058 _2586 Dsui_2587: Dsui_2587 - type IV secretory pathway, VirB10 component, at 2,740,060 to 2,741,385 _2587 Dsui_2588: Dsui_2588 - type IV secretory pathway, VirB9 component, at 2,741,408 to 2,742,262 _2588 Dsui_2589: Dsui_2589 - type II secretory pathway, component PulD, at 2,742,273 to 2,743,994 _2589 Position (kb) 2740 2741 2742Strain fitness (log2 ratio) -2 -1 0 1at 2739.138 kb on - strandat 2739.165 kb on + strandat 2739.171 kb on - strand, within Dsui_2586at 2739.258 kb on - strand, within Dsui_2586at 2739.258 kb on - strand, within Dsui_2586at 2739.289 kb on + strand, within Dsui_2586at 2739.361 kb on + strand, within Dsui_2586at 2739.427 kb on + strand, within Dsui_2586at 2739.430 kb on - strand, within Dsui_2586at 2739.773 kb on - strand, within Dsui_2586at 2739.899 kb on + strand, within Dsui_2586at 2739.942 kb on - strand, within Dsui_2586at 2740.011 kb on - strandat 2740.069 kb on - strandat 2740.219 kb on - strand, within Dsui_2587at 2740.285 kb on - strand, within Dsui_2587at 2740.285 kb on - strand, within Dsui_2587at 2740.362 kb on - strand, within Dsui_2587at 2740.471 kb on + strandat 2740.480 kb on - strand, within Dsui_2587at 2740.508 kb on - strand, within Dsui_2587at 2740.541 kb on + strand, within Dsui_2587at 2740.572 kb on - strand, within Dsui_2587at 2740.572 kb on - strand, within Dsui_2587at 2740.631 kb on - strand, within Dsui_2587at 2740.690 kb on - strand, within Dsui_2587at 2740.741 kb on - strand, within Dsui_2587at 2740.843 kb on + strand, within Dsui_2587at 2740.843 kb on + strand, within Dsui_2587at 2740.850 kb on + strand, within Dsui_2587at 2740.851 kb on - strand, within Dsui_2587at 2740.902 kb on - strand, within Dsui_2587at 2740.964 kb on - strand, within Dsui_2587at 2740.978 kb on + strand, within Dsui_2587at 2740.986 kb on - strand, within Dsui_2587at 2741.077 kb on + strand, within Dsui_2587at 2741.077 kb on + strand, within Dsui_2587at 2741.194 kb on + strand, within Dsui_2587at 2741.254 kb on + strandat 2741.266 kb on - strandat 2741.300 kb on + strandat 2741.308 kb on - strandat 2741.310 kb on + strandat 2741.318 kb on - strandat 2741.380 kb on + strandat 2741.931 kb on - strand, within Dsui_2588at 2742.097 kb on + strand, within Dsui_2588at 2742.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,739,138 - -0.9
2,739,165 + +0.7
2,739,171 - Dsui_2586 0.10 +0.7
2,739,258 - Dsui_2586 0.19 -0.3
2,739,258 - Dsui_2586 0.19 +0.7
2,739,289 + Dsui_2586 0.22 -0.9
2,739,361 + Dsui_2586 0.29 +0.7
2,739,427 + Dsui_2586 0.36 +0.7
2,739,430 - Dsui_2586 0.36 -0.9
2,739,773 - Dsui_2586 0.71 -0.3
2,739,899 + Dsui_2586 0.84 -0.9
2,739,942 - Dsui_2586 0.88 +0.7
2,740,011 - -0.3
2,740,069 - -0.3
2,740,219 - Dsui_2587 0.12 +0.7
2,740,285 - Dsui_2587 0.17 -0.3
2,740,285 - Dsui_2587 0.17 -2.1
2,740,362 - Dsui_2587 0.23 -2.1
2,740,471 + +1.7
2,740,480 - Dsui_2587 0.32 -0.9
2,740,508 - Dsui_2587 0.34 -0.9
2,740,541 + Dsui_2587 0.36 -0.3
2,740,572 - Dsui_2587 0.39 -0.3
2,740,572 - Dsui_2587 0.39 +0.7
2,740,631 - Dsui_2587 0.43 +0.7
2,740,690 - Dsui_2587 0.48 +0.7
2,740,741 - Dsui_2587 0.51 -2.3
2,740,843 + Dsui_2587 0.59 +0.7
2,740,843 + Dsui_2587 0.59 -0.3
2,740,850 + Dsui_2587 0.60 -0.3
2,740,851 - Dsui_2587 0.60 -0.9
2,740,902 - Dsui_2587 0.63 +0.7
2,740,964 - Dsui_2587 0.68 -0.9
2,740,978 + Dsui_2587 0.69 +0.7
2,740,986 - Dsui_2587 0.70 -0.3
2,741,077 + Dsui_2587 0.77 -0.9
2,741,077 + Dsui_2587 0.77 +0.7
2,741,194 + Dsui_2587 0.86 -0.9
2,741,254 + +0.7
2,741,266 - +0.7
2,741,300 + -0.3
2,741,308 - -1.6
2,741,310 + -0.3
2,741,318 - -0.3
2,741,380 + +0.7
2,741,931 - Dsui_2588 0.61 -0.3
2,742,097 + Dsui_2588 0.81 -0.3
2,742,240 - -0.9

Or see this region's nucleotide sequence