Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2572 and Dsui_2573 are separated by 133 nucleotides Dsui_2573 and Dsui_2574 are separated by 68 nucleotides
Dsui_2572: Dsui_2572 - conjugative coupling factor TraD, TOL family, at 2,721,455 to 2,723,548
_2572
Dsui_2573: Dsui_2573 - hypothetical protein, at 2,723,682 to 2,723,906
_2573
Dsui_2574: Dsui_2574 - integral membrane protein (PIN domain superfamily), at 2,723,975 to 2,725,099
_2574
Position (kb)
2723
2724 Strain fitness (log2 ratio)
-2
-1
0
1 at 2722.712 kb on + strand at 2722.769 kb on + strand, within Dsui_2572 at 2722.890 kb on + strand, within Dsui_2572 at 2722.905 kb on - strand, within Dsui_2572 at 2722.987 kb on + strand, within Dsui_2572 at 2722.987 kb on + strand, within Dsui_2572 at 2722.995 kb on - strand, within Dsui_2572 at 2723.001 kb on - strand, within Dsui_2572 at 2723.002 kb on - strand, within Dsui_2572 at 2723.012 kb on + strand, within Dsui_2572 at 2723.017 kb on + strand, within Dsui_2572 at 2723.017 kb on + strand, within Dsui_2572 at 2723.017 kb on + strand, within Dsui_2572 at 2723.025 kb on - strand, within Dsui_2572 at 2723.025 kb on - strand, within Dsui_2572 at 2723.025 kb on - strand, within Dsui_2572 at 2723.025 kb on - strand, within Dsui_2572 at 2723.145 kb on + strand, within Dsui_2572 at 2723.153 kb on - strand, within Dsui_2572 at 2723.204 kb on + strand, within Dsui_2572 at 2723.231 kb on - strand, within Dsui_2572 at 2723.251 kb on + strand, within Dsui_2572 at 2723.295 kb on - strand, within Dsui_2572 at 2723.325 kb on - strand, within Dsui_2572 at 2723.325 kb on - strand, within Dsui_2572 at 2723.335 kb on - strand, within Dsui_2572 at 2723.382 kb on - strand at 2723.403 kb on - strand at 2723.413 kb on - strand at 2723.413 kb on - strand at 2723.515 kb on - strand at 2723.546 kb on - strand at 2723.690 kb on + strand at 2723.731 kb on - strand, within Dsui_2573 at 2723.773 kb on - strand, within Dsui_2573 at 2723.864 kb on + strand, within Dsui_2573 at 2723.872 kb on - strand, within Dsui_2573 at 2723.888 kb on + strand at 2723.903 kb on + strand at 2723.919 kb on - strand at 2723.921 kb on - strand at 2723.986 kb on - strand at 2724.005 kb on - strand at 2724.010 kb on - strand at 2724.018 kb on - strand at 2724.027 kb on + strand at 2724.033 kb on - strand at 2724.033 kb on - strand at 2724.040 kb on - strand at 2724.070 kb on + strand at 2724.097 kb on - strand, within Dsui_2574 at 2724.149 kb on + strand, within Dsui_2574 at 2724.149 kb on + strand, within Dsui_2574 at 2724.213 kb on + strand, within Dsui_2574 at 2724.277 kb on + strand, within Dsui_2574 at 2724.308 kb on + strand, within Dsui_2574 at 2724.342 kb on - strand, within Dsui_2574 at 2724.353 kb on + strand, within Dsui_2574 at 2724.476 kb on - strand, within Dsui_2574 at 2724.491 kb on - strand, within Dsui_2574 at 2724.520 kb on - strand, within Dsui_2574 at 2724.534 kb on - strand, within Dsui_2574 at 2724.573 kb on + strand, within Dsui_2574 at 2724.585 kb on + strand, within Dsui_2574 at 2724.593 kb on - strand, within Dsui_2574 at 2724.611 kb on - strand, within Dsui_2574 at 2724.613 kb on + strand, within Dsui_2574 at 2724.702 kb on + strand, within Dsui_2574 at 2724.708 kb on + strand, within Dsui_2574 at 2724.758 kb on - strand, within Dsui_2574 at 2724.787 kb on + strand, within Dsui_2574 at 2724.809 kb on + strand, within Dsui_2574 at 2724.817 kb on - strand, within Dsui_2574 at 2724.817 kb on - strand, within Dsui_2574 at 2724.827 kb on - strand, within Dsui_2574 at 2724.854 kb on + strand, within Dsui_2574 at 2724.862 kb on + strand, within Dsui_2574
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,722,712 + +0.7 2,722,769 + Dsui_2572 0.63 +0.7 2,722,890 + Dsui_2572 0.69 -0.3 2,722,905 - Dsui_2572 0.69 +0.7 2,722,987 + Dsui_2572 0.73 -1.6 2,722,987 + Dsui_2572 0.73 -1.6 2,722,995 - Dsui_2572 0.74 +0.7 2,723,001 - Dsui_2572 0.74 +0.7 2,723,002 - Dsui_2572 0.74 -0.9 2,723,012 + Dsui_2572 0.74 -0.3 2,723,017 + Dsui_2572 0.75 -0.9 2,723,017 + Dsui_2572 0.75 +0.7 2,723,017 + Dsui_2572 0.75 +0.7 2,723,025 - Dsui_2572 0.75 -1.6 2,723,025 - Dsui_2572 0.75 +0.7 2,723,025 - Dsui_2572 0.75 -0.3 2,723,025 - Dsui_2572 0.75 +0.7 2,723,145 + Dsui_2572 0.81 +0.7 2,723,153 - Dsui_2572 0.81 +0.7 2,723,204 + Dsui_2572 0.84 +0.7 2,723,231 - Dsui_2572 0.85 -1.6 2,723,251 + Dsui_2572 0.86 +0.7 2,723,295 - Dsui_2572 0.88 +0.7 2,723,325 - Dsui_2572 0.89 +0.7 2,723,325 - Dsui_2572 0.89 -1.3 2,723,335 - Dsui_2572 0.90 -0.9 2,723,382 - -1.3 2,723,403 - +0.7 2,723,413 - +0.7 2,723,413 - -0.3 2,723,515 - +0.7 2,723,546 - +0.7 2,723,690 + -0.6 2,723,731 - Dsui_2573 0.22 -0.3 2,723,773 - Dsui_2573 0.40 +0.7 2,723,864 + Dsui_2573 0.81 +0.5 2,723,872 - Dsui_2573 0.84 +0.7 2,723,888 + -0.6 2,723,903 + +0.1 2,723,919 - -0.3 2,723,921 - +0.1 2,723,986 - -2.5 2,724,005 - +0.7 2,724,010 - +0.7 2,724,018 - -0.3 2,724,027 + -0.3 2,724,033 - +0.3 2,724,033 - +0.7 2,724,040 - +0.7 2,724,070 + -0.3 2,724,097 - Dsui_2574 0.11 -1.9 2,724,149 + Dsui_2574 0.15 +0.7 2,724,149 + Dsui_2574 0.15 +0.7 2,724,213 + Dsui_2574 0.21 +0.7 2,724,277 + Dsui_2574 0.27 -0.9 2,724,308 + Dsui_2574 0.30 +0.7 2,724,342 - Dsui_2574 0.33 +0.7 2,724,353 + Dsui_2574 0.34 +0.7 2,724,476 - Dsui_2574 0.45 -0.3 2,724,491 - Dsui_2574 0.46 -1.3 2,724,520 - Dsui_2574 0.48 -0.3 2,724,534 - Dsui_2574 0.50 -1.3 2,724,573 + Dsui_2574 0.53 +0.7 2,724,585 + Dsui_2574 0.54 +0.7 2,724,593 - Dsui_2574 0.55 +0.7 2,724,611 - Dsui_2574 0.57 +0.7 2,724,613 + Dsui_2574 0.57 -0.3 2,724,702 + Dsui_2574 0.65 +0.7 2,724,708 + Dsui_2574 0.65 -1.9 2,724,758 - Dsui_2574 0.70 -0.3 2,724,787 + Dsui_2574 0.72 -1.3 2,724,809 + Dsui_2574 0.74 +0.7 2,724,817 - Dsui_2574 0.75 +0.7 2,724,817 - Dsui_2574 0.75 -0.3 2,724,827 - Dsui_2574 0.76 -0.3 2,724,854 + Dsui_2574 0.78 -0.3 2,724,862 + Dsui_2574 0.79 +0.7
Or see this region's nucleotide sequence