Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2272 and Dsui_2273 are separated by 55 nucleotides Dsui_2273 and Dsui_2274 are separated by 201 nucleotides Dsui_2274 and Dsui_2275 overlap by 17 nucleotides Dsui_2275 and Dsui_2276 are separated by 6 nucleotides
Dsui_2272: Dsui_2272 - hypothetical protein, at 2,422,947 to 2,424,431
_2272
Dsui_2273: Dsui_2273 - TonB-dependent siderophore receptor, at 2,424,487 to 2,426,691
_2273
Dsui_2274: Dsui_2274 - hypothetical protein, at 2,426,893 to 2,427,222
_2274
Dsui_2275: Dsui_2275 - putative transcriptional regulator, at 2,427,206 to 2,427,433
_2275
Dsui_2276: Dsui_2276 - Protein of unknown function (DUF2975), at 2,427,440 to 2,427,991
_2276
Position (kb)
2424
2425
2426
2427 Strain fitness (log2 ratio)
-2
-1
0
1 at 2423.561 kb on + strand at 2423.651 kb on + strand at 2423.762 kb on - strand at 2423.844 kb on - strand, within Dsui_2272 at 2423.867 kb on + strand at 2424.259 kb on - strand, within Dsui_2272 at 2424.279 kb on + strand at 2424.295 kb on + strand at 2424.327 kb on - strand at 2424.425 kb on - strand at 2424.518 kb on - strand at 2424.566 kb on + strand at 2424.574 kb on - strand at 2424.623 kb on + strand at 2424.631 kb on - strand at 2424.709 kb on - strand, within Dsui_2273 at 2424.812 kb on - strand, within Dsui_2273 at 2424.836 kb on - strand, within Dsui_2273 at 2425.032 kb on - strand, within Dsui_2273 at 2425.381 kb on - strand, within Dsui_2273 at 2425.474 kb on - strand, within Dsui_2273 at 2425.670 kb on - strand at 2425.711 kb on + strand at 2425.729 kb on - strand, within Dsui_2273 at 2425.867 kb on + strand at 2425.867 kb on + strand at 2425.875 kb on - strand, within Dsui_2273 at 2425.934 kb on - strand, within Dsui_2273 at 2426.245 kb on + strand at 2426.270 kb on + strand at 2426.342 kb on + strand at 2426.477 kb on - strand at 2426.498 kb on + strand at 2426.545 kb on - strand at 2426.604 kb on - strand at 2426.604 kb on - strand at 2426.679 kb on - strand at 2426.765 kb on - strand at 2426.880 kb on - strand at 2426.893 kb on - strand at 2426.939 kb on - strand, within Dsui_2274 at 2427.068 kb on - strand at 2427.247 kb on - strand, within Dsui_2275 at 2427.250 kb on + strand, within Dsui_2275 at 2427.309 kb on + strand, within Dsui_2275 at 2427.309 kb on + strand, within Dsui_2275 at 2427.309 kb on + strand at 2427.309 kb on + strand at 2427.309 kb on + strand, within Dsui_2275 at 2427.373 kb on + strand at 2427.446 kb on + strand at 2427.449 kb on - strand at 2427.469 kb on + strand at 2427.486 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,423,561 + -0.7 2,423,651 + -0.1 2,423,762 - -0.1 2,423,844 - Dsui_2272 0.60 -1.4 2,423,867 + +0.9 2,424,259 - Dsui_2272 0.88 -1.4 2,424,279 + +0.9 2,424,295 + +0.9 2,424,327 - -1.7 2,424,425 - -0.7 2,424,518 - +0.9 2,424,566 + +0.9 2,424,574 - +0.9 2,424,623 + -0.1 2,424,631 - -1.4 2,424,709 - Dsui_2273 0.10 +0.9 2,424,812 - Dsui_2273 0.15 +0.9 2,424,836 - Dsui_2273 0.16 +0.9 2,425,032 - Dsui_2273 0.25 +0.9 2,425,381 - Dsui_2273 0.41 -1.1 2,425,474 - Dsui_2273 0.45 -0.7 2,425,670 - -0.1 2,425,711 + -0.1 2,425,729 - Dsui_2273 0.56 -0.1 2,425,867 + -1.1 2,425,867 + +0.9 2,425,875 - Dsui_2273 0.63 +0.9 2,425,934 - Dsui_2273 0.66 -0.1 2,426,245 + +0.9 2,426,270 + -0.7 2,426,342 + +0.9 2,426,477 - -1.7 2,426,498 + +0.9 2,426,545 - +0.9 2,426,604 - -0.1 2,426,604 - -0.7 2,426,679 - -1.1 2,426,765 - -1.1 2,426,880 - -0.1 2,426,893 - -2.5 2,426,939 - Dsui_2274 0.14 -0.7 2,427,068 - +0.9 2,427,247 - Dsui_2275 0.18 +0.1 2,427,250 + Dsui_2275 0.19 -0.1 2,427,309 + Dsui_2275 0.45 +0.9 2,427,309 + Dsui_2275 0.45 -1.1 2,427,309 + +0.9 2,427,309 + +0.9 2,427,309 + Dsui_2275 0.45 +0.9 2,427,373 + +0.9 2,427,446 + -0.4 2,427,449 - +0.9 2,427,469 + -1.1 2,427,486 - -0.3
Or see this region's nucleotide sequence