Strain Fitness in Dechlorosoma suillum PS around Dsui_2273

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2272 and Dsui_2273 are separated by 55 nucleotidesDsui_2273 and Dsui_2274 are separated by 201 nucleotidesDsui_2274 and Dsui_2275 overlap by 17 nucleotidesDsui_2275 and Dsui_2276 are separated by 6 nucleotides Dsui_2272: Dsui_2272 - hypothetical protein, at 2,422,947 to 2,424,431 _2272 Dsui_2273: Dsui_2273 - TonB-dependent siderophore receptor, at 2,424,487 to 2,426,691 _2273 Dsui_2274: Dsui_2274 - hypothetical protein, at 2,426,893 to 2,427,222 _2274 Dsui_2275: Dsui_2275 - putative transcriptional regulator, at 2,427,206 to 2,427,433 _2275 Dsui_2276: Dsui_2276 - Protein of unknown function (DUF2975), at 2,427,440 to 2,427,991 _2276 Position (kb) 2424 2425 2426 2427Strain fitness (log2 ratio) -2 -1 0 1at 2423.561 kb on + strandat 2423.651 kb on + strandat 2423.762 kb on - strandat 2423.844 kb on - strand, within Dsui_2272at 2423.867 kb on + strandat 2424.259 kb on - strand, within Dsui_2272at 2424.279 kb on + strandat 2424.295 kb on + strandat 2424.327 kb on - strandat 2424.425 kb on - strandat 2424.518 kb on - strandat 2424.566 kb on + strandat 2424.574 kb on - strandat 2424.623 kb on + strandat 2424.631 kb on - strandat 2424.709 kb on - strand, within Dsui_2273at 2424.812 kb on - strand, within Dsui_2273at 2424.836 kb on - strand, within Dsui_2273at 2425.032 kb on - strand, within Dsui_2273at 2425.381 kb on - strand, within Dsui_2273at 2425.474 kb on - strand, within Dsui_2273at 2425.670 kb on - strandat 2425.711 kb on + strandat 2425.729 kb on - strand, within Dsui_2273at 2425.867 kb on + strandat 2425.867 kb on + strandat 2425.875 kb on - strand, within Dsui_2273at 2425.934 kb on - strand, within Dsui_2273at 2426.245 kb on + strandat 2426.270 kb on + strandat 2426.342 kb on + strandat 2426.477 kb on - strandat 2426.498 kb on + strandat 2426.545 kb on - strandat 2426.604 kb on - strandat 2426.604 kb on - strandat 2426.679 kb on - strandat 2426.765 kb on - strandat 2426.880 kb on - strandat 2426.893 kb on - strandat 2426.939 kb on - strand, within Dsui_2274at 2427.068 kb on - strandat 2427.247 kb on - strand, within Dsui_2275at 2427.250 kb on + strand, within Dsui_2275at 2427.309 kb on + strand, within Dsui_2275at 2427.309 kb on + strand, within Dsui_2275at 2427.309 kb on + strandat 2427.309 kb on + strandat 2427.309 kb on + strand, within Dsui_2275at 2427.373 kb on + strandat 2427.446 kb on + strandat 2427.449 kb on - strandat 2427.469 kb on + strandat 2427.486 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,423,561 + -0.7
2,423,651 + -0.1
2,423,762 - -0.1
2,423,844 - Dsui_2272 0.60 -1.4
2,423,867 + +0.9
2,424,259 - Dsui_2272 0.88 -1.4
2,424,279 + +0.9
2,424,295 + +0.9
2,424,327 - -1.7
2,424,425 - -0.7
2,424,518 - +0.9
2,424,566 + +0.9
2,424,574 - +0.9
2,424,623 + -0.1
2,424,631 - -1.4
2,424,709 - Dsui_2273 0.10 +0.9
2,424,812 - Dsui_2273 0.15 +0.9
2,424,836 - Dsui_2273 0.16 +0.9
2,425,032 - Dsui_2273 0.25 +0.9
2,425,381 - Dsui_2273 0.41 -1.1
2,425,474 - Dsui_2273 0.45 -0.7
2,425,670 - -0.1
2,425,711 + -0.1
2,425,729 - Dsui_2273 0.56 -0.1
2,425,867 + -1.1
2,425,867 + +0.9
2,425,875 - Dsui_2273 0.63 +0.9
2,425,934 - Dsui_2273 0.66 -0.1
2,426,245 + +0.9
2,426,270 + -0.7
2,426,342 + +0.9
2,426,477 - -1.7
2,426,498 + +0.9
2,426,545 - +0.9
2,426,604 - -0.1
2,426,604 - -0.7
2,426,679 - -1.1
2,426,765 - -1.1
2,426,880 - -0.1
2,426,893 - -2.5
2,426,939 - Dsui_2274 0.14 -0.7
2,427,068 - +0.9
2,427,247 - Dsui_2275 0.18 +0.1
2,427,250 + Dsui_2275 0.19 -0.1
2,427,309 + Dsui_2275 0.45 +0.9
2,427,309 + Dsui_2275 0.45 -1.1
2,427,309 + +0.9
2,427,309 + +0.9
2,427,309 + Dsui_2275 0.45 +0.9
2,427,373 + +0.9
2,427,446 + -0.4
2,427,449 - +0.9
2,427,469 + -1.1
2,427,486 - -0.3

Or see this region's nucleotide sequence