Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2233 and Dsui_2234 are separated by 260 nucleotides Dsui_2234 and Dsui_2235 are separated by 73 nucleotides Dsui_2235 and Dsui_2236 are separated by 57 nucleotides
Dsui_2233: Dsui_2233 - catalase/peroxidase HPI, at 2,375,338 to 2,377,518
_2233
Dsui_2234: Dsui_2234 - hypothetical protein, at 2,377,779 to 2,378,162
_2234
Dsui_2235: Dsui_2235 - hypothetical protein, at 2,378,236 to 2,379,120
_2235
Dsui_2236: Dsui_2236 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,379,178 to 2,380,164
_2236
Position (kb)
2378
2379
2380 Strain fitness (log2 ratio)
-2
-1
0
1 at 2377.239 kb on - strand, within Dsui_2233 at 2377.286 kb on + strand, within Dsui_2233 at 2377.288 kb on + strand at 2377.341 kb on - strand at 2377.358 kb on - strand at 2377.392 kb on + strand at 2377.416 kb on - strand at 2377.484 kb on - strand at 2377.485 kb on - strand at 2377.546 kb on - strand at 2377.559 kb on - strand at 2377.559 kb on - strand at 2377.657 kb on + strand at 2377.676 kb on + strand at 2377.684 kb on - strand at 2377.784 kb on - strand at 2377.911 kb on - strand, within Dsui_2234 at 2377.936 kb on - strand, within Dsui_2234 at 2378.035 kb on + strand, within Dsui_2234 at 2378.072 kb on - strand, within Dsui_2234 at 2378.165 kb on - strand at 2378.239 kb on + strand at 2378.292 kb on + strand at 2378.300 kb on - strand at 2378.353 kb on - strand, within Dsui_2235 at 2378.537 kb on + strand at 2378.571 kb on - strand at 2378.604 kb on + strand at 2378.772 kb on - strand, within Dsui_2235 at 2378.849 kb on - strand, within Dsui_2235 at 2379.081 kb on - strand at 2379.207 kb on - strand at 2379.253 kb on + strand at 2379.253 kb on + strand at 2379.261 kb on - strand at 2379.262 kb on - strand at 2379.264 kb on + strand at 2379.274 kb on - strand at 2379.284 kb on - strand, within Dsui_2236 at 2379.289 kb on - strand, within Dsui_2236 at 2379.343 kb on - strand at 2379.373 kb on + strand at 2379.658 kb on + strand at 2379.821 kb on + strand at 2379.854 kb on - strand at 2379.970 kb on + strand at 2380.082 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,377,239 - Dsui_2233 0.87 +0.9 2,377,286 + Dsui_2233 0.89 -1.4 2,377,288 + -0.1 2,377,341 - +0.9 2,377,358 - +0.9 2,377,392 + +0.9 2,377,416 - +0.9 2,377,484 - +0.9 2,377,485 - -1.7 2,377,546 - +0.9 2,377,559 - +0.9 2,377,559 - +0.9 2,377,657 + +0.9 2,377,676 + -0.1 2,377,684 - -0.1 2,377,784 - -0.7 2,377,911 - Dsui_2234 0.34 -1.1 2,377,936 - Dsui_2234 0.41 +0.9 2,378,035 + Dsui_2234 0.67 +0.2 2,378,072 - Dsui_2234 0.76 +0.9 2,378,165 - +0.9 2,378,239 + +0.9 2,378,292 + +0.9 2,378,300 - -0.1 2,378,353 - Dsui_2235 0.13 -0.7 2,378,537 + +0.9 2,378,571 - +0.9 2,378,604 + -0.7 2,378,772 - Dsui_2235 0.61 +0.9 2,378,849 - Dsui_2235 0.69 +0.3 2,379,081 - -0.7 2,379,207 - -0.1 2,379,253 + -0.1 2,379,253 + -0.7 2,379,261 - -1.9 2,379,262 - +0.9 2,379,264 + +0.9 2,379,274 - -1.1 2,379,284 - Dsui_2236 0.11 +0.9 2,379,289 - Dsui_2236 0.11 -1.1 2,379,343 - -1.1 2,379,373 + +0.9 2,379,658 + -1.4 2,379,821 + -0.7 2,379,854 - +0.9 2,379,970 + +0.9 2,380,082 - -0.7
Or see this region's nucleotide sequence