Strain Fitness in Dechlorosoma suillum PS around Dsui_2235

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2233 and Dsui_2234 are separated by 260 nucleotidesDsui_2234 and Dsui_2235 are separated by 73 nucleotidesDsui_2235 and Dsui_2236 are separated by 57 nucleotides Dsui_2233: Dsui_2233 - catalase/peroxidase HPI, at 2,375,338 to 2,377,518 _2233 Dsui_2234: Dsui_2234 - hypothetical protein, at 2,377,779 to 2,378,162 _2234 Dsui_2235: Dsui_2235 - hypothetical protein, at 2,378,236 to 2,379,120 _2235 Dsui_2236: Dsui_2236 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,379,178 to 2,380,164 _2236 Position (kb) 2378 2379 2380Strain fitness (log2 ratio) -2 -1 0 1at 2377.239 kb on - strand, within Dsui_2233at 2377.286 kb on + strand, within Dsui_2233at 2377.288 kb on + strandat 2377.341 kb on - strandat 2377.358 kb on - strandat 2377.392 kb on + strandat 2377.416 kb on - strandat 2377.484 kb on - strandat 2377.485 kb on - strandat 2377.546 kb on - strandat 2377.559 kb on - strandat 2377.559 kb on - strandat 2377.657 kb on + strandat 2377.676 kb on + strandat 2377.684 kb on - strandat 2377.784 kb on - strandat 2377.911 kb on - strand, within Dsui_2234at 2377.936 kb on - strand, within Dsui_2234at 2378.035 kb on + strand, within Dsui_2234at 2378.072 kb on - strand, within Dsui_2234at 2378.165 kb on - strandat 2378.239 kb on + strandat 2378.292 kb on + strandat 2378.300 kb on - strandat 2378.353 kb on - strand, within Dsui_2235at 2378.537 kb on + strandat 2378.571 kb on - strandat 2378.604 kb on + strandat 2378.772 kb on - strand, within Dsui_2235at 2378.849 kb on - strand, within Dsui_2235at 2379.081 kb on - strandat 2379.207 kb on - strandat 2379.253 kb on + strandat 2379.253 kb on + strandat 2379.261 kb on - strandat 2379.262 kb on - strandat 2379.264 kb on + strandat 2379.274 kb on - strandat 2379.284 kb on - strand, within Dsui_2236at 2379.289 kb on - strand, within Dsui_2236at 2379.343 kb on - strandat 2379.373 kb on + strandat 2379.658 kb on + strandat 2379.821 kb on + strandat 2379.854 kb on - strandat 2379.970 kb on + strandat 2380.082 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,377,239 - Dsui_2233 0.87 +0.9
2,377,286 + Dsui_2233 0.89 -1.4
2,377,288 + -0.1
2,377,341 - +0.9
2,377,358 - +0.9
2,377,392 + +0.9
2,377,416 - +0.9
2,377,484 - +0.9
2,377,485 - -1.7
2,377,546 - +0.9
2,377,559 - +0.9
2,377,559 - +0.9
2,377,657 + +0.9
2,377,676 + -0.1
2,377,684 - -0.1
2,377,784 - -0.7
2,377,911 - Dsui_2234 0.34 -1.1
2,377,936 - Dsui_2234 0.41 +0.9
2,378,035 + Dsui_2234 0.67 +0.2
2,378,072 - Dsui_2234 0.76 +0.9
2,378,165 - +0.9
2,378,239 + +0.9
2,378,292 + +0.9
2,378,300 - -0.1
2,378,353 - Dsui_2235 0.13 -0.7
2,378,537 + +0.9
2,378,571 - +0.9
2,378,604 + -0.7
2,378,772 - Dsui_2235 0.61 +0.9
2,378,849 - Dsui_2235 0.69 +0.3
2,379,081 - -0.7
2,379,207 - -0.1
2,379,253 + -0.1
2,379,253 + -0.7
2,379,261 - -1.9
2,379,262 - +0.9
2,379,264 + +0.9
2,379,274 - -1.1
2,379,284 - Dsui_2236 0.11 +0.9
2,379,289 - Dsui_2236 0.11 -1.1
2,379,343 - -1.1
2,379,373 + +0.9
2,379,658 + -1.4
2,379,821 + -0.7
2,379,854 - +0.9
2,379,970 + +0.9
2,380,082 - -0.7

Or see this region's nucleotide sequence