Strain Fitness in Dechlorosoma suillum PS around Dsui_2221

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2219 and Dsui_2220 are separated by 199 nucleotidesDsui_2220 and Dsui_2221 are separated by 271 nucleotidesDsui_2221 and Dsui_2222 are separated by 68 nucleotides Dsui_2219: Dsui_2219 - dihydrolipoamide dehydrogenase, at 2,359,377 to 2,360,801 _2219 Dsui_2220: Dsui_2220 - hypothetical protein, at 2,361,001 to 2,361,321 _2220 Dsui_2221: Dsui_2221 - putative ATPase, at 2,361,593 to 2,362,708 _2221 Dsui_2222: Dsui_2222 - type II secretory pathway, component PulD, at 2,362,777 to 2,363,682 _2222 Position (kb) 2361 2362 2363Strain fitness (log2 ratio) -2 -1 0 1at 2360.795 kb on + strandat 2360.795 kb on + strandat 2360.843 kb on + strandat 2360.946 kb on + strandat 2360.951 kb on + strandat 2360.959 kb on - strandat 2360.973 kb on + strandat 2361.024 kb on - strandat 2361.028 kb on - strandat 2361.092 kb on + strand, within Dsui_2220at 2361.136 kb on + strandat 2361.141 kb on - strand, within Dsui_2220at 2361.180 kb on + strandat 2361.180 kb on - strand, within Dsui_2220at 2361.188 kb on - strand, within Dsui_2220at 2361.279 kb on - strand, within Dsui_2220at 2361.377 kb on + strandat 2361.476 kb on + strandat 2361.479 kb on - strandat 2361.484 kb on - strandat 2361.484 kb on - strandat 2361.491 kb on + strandat 2361.538 kb on - strandat 2361.565 kb on + strandat 2361.608 kb on - strandat 2361.680 kb on - strandat 2361.833 kb on - strandat 2361.917 kb on + strand, within Dsui_2221at 2362.164 kb on + strand, within Dsui_2221at 2362.233 kb on + strand, within Dsui_2221at 2362.233 kb on + strand, within Dsui_2221at 2362.302 kb on + strand, within Dsui_2221at 2362.325 kb on - strandat 2362.475 kb on + strand, within Dsui_2221at 2362.604 kb on + strandat 2362.606 kb on + strandat 2362.606 kb on + strandat 2362.614 kb on - strandat 2362.614 kb on - strandat 2362.774 kb on + strandat 2362.808 kb on + strandat 2362.818 kb on + strandat 2362.847 kb on - strandat 2362.851 kb on + strandat 2362.985 kb on + strand, within Dsui_2222at 2363.048 kb on + strand, within Dsui_2222at 2363.058 kb on + strand, within Dsui_2222at 2363.073 kb on - strand, within Dsui_2222at 2363.222 kb on + strand, within Dsui_2222at 2363.222 kb on + strand, within Dsui_2222at 2363.361 kb on + strand, within Dsui_2222at 2363.420 kb on - strand, within Dsui_2222at 2363.426 kb on + strand, within Dsui_2222at 2363.473 kb on + strand, within Dsui_2222at 2363.513 kb on + strand, within Dsui_2222

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,360,795 + +0.4
2,360,795 + +0.2
2,360,843 + +0.2
2,360,946 + -0.1
2,360,951 + -0.1
2,360,959 - -0.1
2,360,973 + -0.1
2,361,024 - +0.9
2,361,028 - +0.3
2,361,092 + Dsui_2220 0.28 -0.7
2,361,136 + +0.9
2,361,141 - Dsui_2220 0.44 +0.9
2,361,180 + +0.9
2,361,180 - Dsui_2220 0.56 -1.1
2,361,188 - Dsui_2220 0.58 -1.1
2,361,279 - Dsui_2220 0.87 +0.9
2,361,377 + +0.9
2,361,476 + +0.9
2,361,479 - -0.1
2,361,484 - -0.1
2,361,484 - -1.1
2,361,491 + +0.9
2,361,538 - +0.3
2,361,565 + -2.1
2,361,608 - +0.9
2,361,680 - -0.7
2,361,833 - +0.9
2,361,917 + Dsui_2221 0.29 +0.5
2,362,164 + Dsui_2221 0.51 +0.3
2,362,233 + Dsui_2221 0.57 +0.8
2,362,233 + Dsui_2221 0.57 +0.4
2,362,302 + Dsui_2221 0.64 +0.6
2,362,325 - +0.9
2,362,475 + Dsui_2221 0.79 +0.6
2,362,604 + +0.7
2,362,606 + +0.7
2,362,606 + +1.1
2,362,614 - +0.9
2,362,614 - +0.9
2,362,774 + +0.4
2,362,808 + -0.4
2,362,818 + +0.7
2,362,847 - +0.9
2,362,851 + +0.3
2,362,985 + Dsui_2222 0.23 +0.4
2,363,048 + Dsui_2222 0.30 +0.2
2,363,058 + Dsui_2222 0.31 +0.4
2,363,073 - Dsui_2222 0.33 -0.7
2,363,222 + Dsui_2222 0.49 +0.2
2,363,222 + Dsui_2222 0.49 +0.4
2,363,361 + Dsui_2222 0.64 -0.7
2,363,420 - Dsui_2222 0.71 +0.9
2,363,426 + Dsui_2222 0.72 +0.9
2,363,473 + Dsui_2222 0.77 +0.2
2,363,513 + Dsui_2222 0.81 -0.4

Or see this region's nucleotide sequence