Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2130 and Dsui_2131 are separated by 352 nucleotides Dsui_2131 and Dsui_2132 are separated by 150 nucleotides Dsui_2132 and Dsui_2133 are separated by 105 nucleotides Dsui_2133 and Dsui_2134 are separated by 82 nucleotides
Dsui_2130: Dsui_2130 - outer membrane receptor for ferrienterochelin and colicins, at 2,260,464 to 2,262,713
_2130
Dsui_2131: Dsui_2131 - tRNA-Arg, at 2,263,066 to 2,263,142
_2131
Dsui_2132: Dsui_2132 - tRNA-Arg, at 2,263,293 to 2,263,369
_2132
Dsui_2133: Dsui_2133 - tRNA-Ser, at 2,263,475 to 2,263,568
_2133
Dsui_2134: Dsui_2134 - aspartate kinase, monofunctional class, at 2,263,651 to 2,264,874
_2134
Position (kb)
2263
2264 Strain fitness (log2 ratio)
-2
-1
0
1 at 2262.125 kb on - strand, within Dsui_2130 at 2262.190 kb on - strand, within Dsui_2130 at 2262.292 kb on + strand, within Dsui_2130 at 2262.352 kb on - strand, within Dsui_2130 at 2262.371 kb on - strand, within Dsui_2130 at 2262.483 kb on + strand, within Dsui_2130 at 2262.516 kb on + strand at 2262.524 kb on - strand at 2262.633 kb on + strand at 2262.670 kb on - strand at 2262.681 kb on + strand at 2262.822 kb on + strand at 2262.829 kb on + strand at 2262.891 kb on + strand at 2263.128 kb on - strand, within Dsui_2131 at 2263.130 kb on - strand, within Dsui_2131 at 2263.190 kb on - strand at 2263.610 kb on - strand at 2263.611 kb on - strand at 2263.649 kb on + strand at 2263.649 kb on + strand at 2263.657 kb on - strand at 2263.657 kb on - strand at 2263.657 kb on - strand at 2263.660 kb on + strand at 2263.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,262,125 - Dsui_2130 0.74 -2.5 2,262,190 - Dsui_2130 0.77 -1.6 2,262,292 + Dsui_2130 0.81 -0.0 2,262,352 - Dsui_2130 0.84 +1.0 2,262,371 - Dsui_2130 0.85 -1.0 2,262,483 + Dsui_2130 0.90 +1.0 2,262,516 + +1.0 2,262,524 - -1.0 2,262,633 + -1.6 2,262,670 - -0.0 2,262,681 + -0.0 2,262,822 + +1.0 2,262,829 + -0.6 2,262,891 + -0.6 2,263,128 - Dsui_2131 0.81 +0.2 2,263,130 - Dsui_2131 0.83 +0.4 2,263,190 - +0.1 2,263,610 - +0.2 2,263,611 - -0.0 2,263,649 + -0.0 2,263,649 + -0.0 2,263,657 - +0.1 2,263,657 - +0.3 2,263,657 - -0.0 2,263,660 + +0.4 2,263,662 - -2.6
Or see this region's nucleotide sequence