Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2064 and Dsui_2065 are separated by 46 nucleotides Dsui_2065 and Dsui_2066 are separated by 256 nucleotides Dsui_2066 and Dsui_2067 are separated by 250 nucleotides Dsui_2067 and Dsui_2068 overlap by 8 nucleotides
Dsui_2064: Dsui_2064 - ABC-type metal ion transport system, periplasmic component/surface antigen, at 2,182,657 to 2,183,466
_2064
Dsui_2065: Dsui_2065 - hypothetical protein, contains double-stranded beta-helix domain, at 2,183,513 to 2,184,088
_2065
Dsui_2066: Dsui_2066 - ABC-type metal ion transport system, periplasmic component/surface antigen, at 2,184,345 to 2,185,148
_2066
Dsui_2067: Dsui_2067 - ABC-type metal ion transport system, permease component, at 2,185,399 to 2,186,097
_2067
Dsui_2068: Dsui_2068 - ABC-type metal ion transport system, ATPase component, at 2,186,090 to 2,186,926
_2068
Position (kb)
2184
2185
2186 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2183.411 kb on + strand at 2183.421 kb on + strand at 2183.488 kb on + strand at 2183.506 kb on - strand at 2183.559 kb on - strand at 2183.619 kb on + strand, within Dsui_2065 at 2183.640 kb on - strand at 2183.640 kb on - strand, within Dsui_2065 at 2183.657 kb on - strand, within Dsui_2065 at 2183.779 kb on - strand, within Dsui_2065 at 2183.794 kb on - strand, within Dsui_2065 at 2183.795 kb on - strand, within Dsui_2065 at 2183.863 kb on - strand, within Dsui_2065 at 2183.890 kb on + strand, within Dsui_2065 at 2183.952 kb on - strand, within Dsui_2065 at 2184.012 kb on - strand, within Dsui_2065 at 2184.068 kb on + strand at 2184.095 kb on + strand at 2184.101 kb on - strand at 2184.244 kb on + strand at 2184.254 kb on - strand at 2184.288 kb on - strand at 2184.445 kb on + strand, within Dsui_2066 at 2184.527 kb on + strand, within Dsui_2066 at 2184.527 kb on + strand at 2184.607 kb on + strand, within Dsui_2066 at 2184.693 kb on - strand, within Dsui_2066 at 2184.737 kb on + strand, within Dsui_2066 at 2184.766 kb on - strand, within Dsui_2066 at 2184.792 kb on - strand, within Dsui_2066 at 2184.926 kb on - strand, within Dsui_2066 at 2184.933 kb on - strand, within Dsui_2066 at 2185.019 kb on + strand, within Dsui_2066 at 2185.026 kb on - strand, within Dsui_2066 at 2185.135 kb on - strand at 2185.168 kb on - strand at 2185.168 kb on - strand at 2185.168 kb on - strand at 2185.223 kb on - strand at 2185.345 kb on + strand at 2185.389 kb on + strand at 2185.397 kb on - strand at 2185.419 kb on + strand at 2185.574 kb on - strand, within Dsui_2067 at 2185.579 kb on - strand, within Dsui_2067 at 2185.657 kb on + strand, within Dsui_2067 at 2185.673 kb on + strand, within Dsui_2067 at 2185.725 kb on + strand, within Dsui_2067 at 2185.920 kb on - strand, within Dsui_2067 at 2185.925 kb on - strand, within Dsui_2067 at 2185.931 kb on - strand, within Dsui_2067 at 2185.941 kb on - strand, within Dsui_2067 at 2186.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,183,411 + -0.5 2,183,421 + +1.1 2,183,488 + +1.1 2,183,506 - +1.1 2,183,559 - -0.5 2,183,619 + Dsui_2065 0.18 +1.1 2,183,640 - +1.1 2,183,640 - Dsui_2065 0.22 -0.3 2,183,657 - Dsui_2065 0.25 +0.5 2,183,779 - Dsui_2065 0.46 -0.3 2,183,794 - Dsui_2065 0.49 +2.7 2,183,795 - Dsui_2065 0.49 +0.1 2,183,863 - Dsui_2065 0.61 -2.3 2,183,890 + Dsui_2065 0.65 +0.1 2,183,952 - Dsui_2065 0.76 +0.1 2,184,012 - Dsui_2065 0.87 +1.1 2,184,068 + +1.1 2,184,095 + -1.7 2,184,101 - +0.1 2,184,244 + -1.9 2,184,254 - +1.1 2,184,288 - +0.1 2,184,445 + Dsui_2066 0.12 -0.5 2,184,527 + Dsui_2066 0.23 -0.9 2,184,527 + +1.1 2,184,607 + Dsui_2066 0.33 +0.1 2,184,693 - Dsui_2066 0.43 +0.3 2,184,737 + Dsui_2066 0.49 +0.1 2,184,766 - Dsui_2066 0.52 +0.5 2,184,792 - Dsui_2066 0.56 +0.4 2,184,926 - Dsui_2066 0.72 +0.7 2,184,933 - Dsui_2066 0.73 +0.6 2,185,019 + Dsui_2066 0.84 -0.5 2,185,026 - Dsui_2066 0.85 +0.4 2,185,135 - +0.3 2,185,168 - +0.5 2,185,168 - +0.4 2,185,168 - +0.5 2,185,223 - +0.3 2,185,345 + +1.1 2,185,389 + +1.1 2,185,397 - +0.5 2,185,419 + -0.5 2,185,574 - Dsui_2067 0.25 +0.3 2,185,579 - Dsui_2067 0.26 +0.2 2,185,657 + Dsui_2067 0.37 +0.1 2,185,673 + Dsui_2067 0.39 -1.5 2,185,725 + Dsui_2067 0.47 +0.1 2,185,920 - Dsui_2067 0.75 +0.3 2,185,925 - Dsui_2067 0.75 +0.3 2,185,931 - Dsui_2067 0.76 +0.5 2,185,941 - Dsui_2067 0.78 +0.3 2,186,092 + +1.1
Or see this region's nucleotide sequence