Strain Fitness in Dechlorosoma suillum PS around Dsui_2066

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2064 and Dsui_2065 are separated by 46 nucleotidesDsui_2065 and Dsui_2066 are separated by 256 nucleotidesDsui_2066 and Dsui_2067 are separated by 250 nucleotidesDsui_2067 and Dsui_2068 overlap by 8 nucleotides Dsui_2064: Dsui_2064 - ABC-type metal ion transport system, periplasmic component/surface antigen, at 2,182,657 to 2,183,466 _2064 Dsui_2065: Dsui_2065 - hypothetical protein, contains double-stranded beta-helix domain, at 2,183,513 to 2,184,088 _2065 Dsui_2066: Dsui_2066 - ABC-type metal ion transport system, periplasmic component/surface antigen, at 2,184,345 to 2,185,148 _2066 Dsui_2067: Dsui_2067 - ABC-type metal ion transport system, permease component, at 2,185,399 to 2,186,097 _2067 Dsui_2068: Dsui_2068 - ABC-type metal ion transport system, ATPase component, at 2,186,090 to 2,186,926 _2068 Position (kb) 2184 2185 2186Strain fitness (log2 ratio) -2 -1 0 1 2at 2183.411 kb on + strandat 2183.421 kb on + strandat 2183.488 kb on + strandat 2183.506 kb on - strandat 2183.559 kb on - strandat 2183.619 kb on + strand, within Dsui_2065at 2183.640 kb on - strandat 2183.640 kb on - strand, within Dsui_2065at 2183.657 kb on - strand, within Dsui_2065at 2183.779 kb on - strand, within Dsui_2065at 2183.794 kb on - strand, within Dsui_2065at 2183.795 kb on - strand, within Dsui_2065at 2183.863 kb on - strand, within Dsui_2065at 2183.890 kb on + strand, within Dsui_2065at 2183.952 kb on - strand, within Dsui_2065at 2184.012 kb on - strand, within Dsui_2065at 2184.068 kb on + strandat 2184.095 kb on + strandat 2184.101 kb on - strandat 2184.244 kb on + strandat 2184.254 kb on - strandat 2184.288 kb on - strandat 2184.445 kb on + strand, within Dsui_2066at 2184.527 kb on + strand, within Dsui_2066at 2184.527 kb on + strandat 2184.607 kb on + strand, within Dsui_2066at 2184.693 kb on - strand, within Dsui_2066at 2184.737 kb on + strand, within Dsui_2066at 2184.766 kb on - strand, within Dsui_2066at 2184.792 kb on - strand, within Dsui_2066at 2184.926 kb on - strand, within Dsui_2066at 2184.933 kb on - strand, within Dsui_2066at 2185.019 kb on + strand, within Dsui_2066at 2185.026 kb on - strand, within Dsui_2066at 2185.135 kb on - strandat 2185.168 kb on - strandat 2185.168 kb on - strandat 2185.168 kb on - strandat 2185.223 kb on - strandat 2185.345 kb on + strandat 2185.389 kb on + strandat 2185.397 kb on - strandat 2185.419 kb on + strandat 2185.574 kb on - strand, within Dsui_2067at 2185.579 kb on - strand, within Dsui_2067at 2185.657 kb on + strand, within Dsui_2067at 2185.673 kb on + strand, within Dsui_2067at 2185.725 kb on + strand, within Dsui_2067at 2185.920 kb on - strand, within Dsui_2067at 2185.925 kb on - strand, within Dsui_2067at 2185.931 kb on - strand, within Dsui_2067at 2185.941 kb on - strand, within Dsui_2067at 2186.092 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,183,411 + -0.5
2,183,421 + +1.1
2,183,488 + +1.1
2,183,506 - +1.1
2,183,559 - -0.5
2,183,619 + Dsui_2065 0.18 +1.1
2,183,640 - +1.1
2,183,640 - Dsui_2065 0.22 -0.3
2,183,657 - Dsui_2065 0.25 +0.5
2,183,779 - Dsui_2065 0.46 -0.3
2,183,794 - Dsui_2065 0.49 +2.7
2,183,795 - Dsui_2065 0.49 +0.1
2,183,863 - Dsui_2065 0.61 -2.3
2,183,890 + Dsui_2065 0.65 +0.1
2,183,952 - Dsui_2065 0.76 +0.1
2,184,012 - Dsui_2065 0.87 +1.1
2,184,068 + +1.1
2,184,095 + -1.7
2,184,101 - +0.1
2,184,244 + -1.9
2,184,254 - +1.1
2,184,288 - +0.1
2,184,445 + Dsui_2066 0.12 -0.5
2,184,527 + Dsui_2066 0.23 -0.9
2,184,527 + +1.1
2,184,607 + Dsui_2066 0.33 +0.1
2,184,693 - Dsui_2066 0.43 +0.3
2,184,737 + Dsui_2066 0.49 +0.1
2,184,766 - Dsui_2066 0.52 +0.5
2,184,792 - Dsui_2066 0.56 +0.4
2,184,926 - Dsui_2066 0.72 +0.7
2,184,933 - Dsui_2066 0.73 +0.6
2,185,019 + Dsui_2066 0.84 -0.5
2,185,026 - Dsui_2066 0.85 +0.4
2,185,135 - +0.3
2,185,168 - +0.5
2,185,168 - +0.4
2,185,168 - +0.5
2,185,223 - +0.3
2,185,345 + +1.1
2,185,389 + +1.1
2,185,397 - +0.5
2,185,419 + -0.5
2,185,574 - Dsui_2067 0.25 +0.3
2,185,579 - Dsui_2067 0.26 +0.2
2,185,657 + Dsui_2067 0.37 +0.1
2,185,673 + Dsui_2067 0.39 -1.5
2,185,725 + Dsui_2067 0.47 +0.1
2,185,920 - Dsui_2067 0.75 +0.3
2,185,925 - Dsui_2067 0.75 +0.3
2,185,931 - Dsui_2067 0.76 +0.5
2,185,941 - Dsui_2067 0.78 +0.3
2,186,092 + +1.1

Or see this region's nucleotide sequence