Strain Fitness in Dechlorosoma suillum PS around Dsui_2055

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2053 and Dsui_2054 are separated by 16 nucleotidesDsui_2054 and Dsui_2055 are separated by 194 nucleotidesDsui_2055 and Dsui_2056 are separated by 674 nucleotides Dsui_2053: Dsui_2053 - HNH endonuclease, at 2,173,150 to 2,173,530 _2053 Dsui_2054: Dsui_2054 - hypothetical protein, at 2,173,547 to 2,173,915 _2054 Dsui_2055: Dsui_2055 - methylase involved in ubiquinone/menaquinone biosynthesis, at 2,174,110 to 2,174,913 _2055 Dsui_2056: Dsui_2056 - hypothetical protein, at 2,175,588 to 2,176,142 _2056 Position (kb) 2174 2175Strain fitness (log2 ratio) -2 -1 0 1 2at 2173.147 kb on + strandat 2173.153 kb on + strandat 2173.160 kb on + strandat 2173.168 kb on - strandat 2173.181 kb on + strandat 2173.243 kb on + strand, within Dsui_2053at 2173.359 kb on - strand, within Dsui_2053at 2173.448 kb on + strand, within Dsui_2053at 2173.503 kb on - strandat 2173.503 kb on - strandat 2173.525 kb on + strandat 2173.592 kb on + strandat 2173.624 kb on + strand, within Dsui_2054at 2173.714 kb on - strand, within Dsui_2054at 2173.778 kb on + strand, within Dsui_2054at 2173.809 kb on - strand, within Dsui_2054at 2173.941 kb on - strandat 2174.022 kb on - strandat 2174.058 kb on + strandat 2174.089 kb on - strandat 2174.099 kb on - strandat 2174.182 kb on + strandat 2174.189 kb on + strandat 2174.262 kb on - strandat 2174.271 kb on - strandat 2174.401 kb on - strandat 2174.654 kb on - strand, within Dsui_2055at 2174.775 kb on - strandat 2174.823 kb on - strand, within Dsui_2055at 2174.922 kb on - strandat 2174.927 kb on - strandat 2174.953 kb on - strandat 2175.053 kb on + strandat 2175.086 kb on + strandat 2175.096 kb on + strandat 2175.126 kb on + strandat 2175.196 kb on + strandat 2175.244 kb on + strandat 2175.244 kb on + strandat 2175.244 kb on + strandat 2175.288 kb on - strandat 2175.288 kb on - strandat 2175.288 kb on - strandat 2175.288 kb on - strandat 2175.288 kb on - strandat 2175.314 kb on + strandat 2175.361 kb on - strandat 2175.366 kb on - strandat 2175.397 kb on - strandat 2175.424 kb on - strandat 2175.424 kb on - strandat 2175.434 kb on - strandat 2175.441 kb on + strandat 2175.449 kb on - strandat 2175.484 kb on - strandat 2175.497 kb on + strandat 2175.497 kb on + strandat 2175.505 kb on - strandat 2175.507 kb on + strandat 2175.621 kb on - strandat 2175.678 kb on - strand, within Dsui_2056at 2175.682 kb on + strand, within Dsui_2056at 2175.682 kb on + strand, within Dsui_2056at 2175.682 kb on + strand, within Dsui_2056at 2175.690 kb on - strand, within Dsui_2056at 2175.690 kb on - strand, within Dsui_2056at 2175.690 kb on - strand, within Dsui_2056at 2175.698 kb on + strand, within Dsui_2056at 2175.706 kb on - strand, within Dsui_2056at 2175.719 kb on + strand, within Dsui_2056at 2175.719 kb on + strand, within Dsui_2056at 2175.727 kb on - strand, within Dsui_2056at 2175.727 kb on - strand, within Dsui_2056at 2175.760 kb on - strand, within Dsui_2056at 2175.760 kb on - strand, within Dsui_2056at 2175.760 kb on - strand, within Dsui_2056at 2175.801 kb on - strandat 2175.805 kb on + strand, within Dsui_2056at 2175.811 kb on + strand, within Dsui_2056at 2175.831 kb on - strand, within Dsui_2056at 2175.867 kb on - strand, within Dsui_2056at 2175.877 kb on - strand, within Dsui_2056at 2175.887 kb on + strand, within Dsui_2056at 2175.895 kb on + strand, within Dsui_2056at 2175.912 kb on - strand, within Dsui_2056

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,173,147 + -1.1
2,173,153 + +1.1
2,173,160 + -0.5
2,173,168 - +0.7
2,173,181 + +1.1
2,173,243 + Dsui_2053 0.24 -2.2
2,173,359 - Dsui_2053 0.55 +0.7
2,173,448 + Dsui_2053 0.78 -0.5
2,173,503 - -0.4
2,173,503 - +1.1
2,173,525 + +1.1
2,173,592 + +1.1
2,173,624 + Dsui_2054 0.21 +0.1
2,173,714 - Dsui_2054 0.45 -1.9
2,173,778 + Dsui_2054 0.63 +1.1
2,173,809 - Dsui_2054 0.71 +2.7
2,173,941 - -0.5
2,174,022 - +1.1
2,174,058 + +0.1
2,174,089 - +0.1
2,174,099 - +1.1
2,174,182 + -0.5
2,174,189 + +1.1
2,174,262 - +1.1
2,174,271 - +1.1
2,174,401 - +1.1
2,174,654 - Dsui_2055 0.68 +0.1
2,174,775 - +1.1
2,174,823 - Dsui_2055 0.89 +0.1
2,174,922 - +1.1
2,174,927 - +1.1
2,174,953 - -1.2
2,175,053 + +1.1
2,175,086 + -0.9
2,175,096 + -0.9
2,175,126 + +0.1
2,175,196 + +1.1
2,175,244 + +0.1
2,175,244 + +0.1
2,175,244 + +0.1
2,175,288 - +0.1
2,175,288 - +1.1
2,175,288 - +0.1
2,175,288 - +0.1
2,175,288 - -0.5
2,175,314 + -0.9
2,175,361 - +1.1
2,175,366 - +1.1
2,175,397 - +0.1
2,175,424 - -0.9
2,175,424 - +1.1
2,175,434 - +0.1
2,175,441 + +1.1
2,175,449 - +1.1
2,175,484 - +1.1
2,175,497 + +1.1
2,175,497 + +1.1
2,175,505 - +1.1
2,175,507 + +0.1
2,175,621 - +0.1
2,175,678 - Dsui_2056 0.16 +1.1
2,175,682 + Dsui_2056 0.17 +1.1
2,175,682 + Dsui_2056 0.17 -1.7
2,175,682 + Dsui_2056 0.17 +1.1
2,175,690 - Dsui_2056 0.18 -0.5
2,175,690 - Dsui_2056 0.18 -1.2
2,175,690 - Dsui_2056 0.18 +1.1
2,175,698 + Dsui_2056 0.20 +1.1
2,175,706 - Dsui_2056 0.21 +1.1
2,175,719 + Dsui_2056 0.24 +1.1
2,175,719 + Dsui_2056 0.24 -0.5
2,175,727 - Dsui_2056 0.25 +1.1
2,175,727 - Dsui_2056 0.25 +1.1
2,175,760 - Dsui_2056 0.31 -1.2
2,175,760 - Dsui_2056 0.31 -0.5
2,175,760 - Dsui_2056 0.31 +1.1
2,175,801 - +1.1
2,175,805 + Dsui_2056 0.39 +1.1
2,175,811 + Dsui_2056 0.40 -0.5
2,175,831 - Dsui_2056 0.44 +1.1
2,175,867 - Dsui_2056 0.50 +1.1
2,175,877 - Dsui_2056 0.52 -1.5
2,175,887 + Dsui_2056 0.54 +1.1
2,175,895 + Dsui_2056 0.55 -2.7
2,175,912 - Dsui_2056 0.58 -1.2

Or see this region's nucleotide sequence