Strain Fitness in Dechlorosoma suillum PS around Dsui_2048

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2047 and Dsui_2048 are separated by 64 nucleotidesDsui_2048 and Dsui_2049 are separated by 93 nucleotides Dsui_2047: Dsui_2047 - chromate transporter, chromate ion transporter family, at 2,167,017 to 2,168,399 _2047 Dsui_2048: Dsui_2048 - ATPase component of ABC transporters with duplicated ATPase domain, at 2,168,464 to 2,170,146 _2048 Dsui_2049: Dsui_2049 - ABC-type uncharacterized transport system, permease and ATPase component, at 2,170,240 to 2,171,943 _2049 Position (kb) 2168 2169 2170 2171Strain fitness (log2 ratio) -1 0 1at 2167.471 kb on + strand, within Dsui_2047at 2167.471 kb on + strandat 2167.479 kb on - strandat 2167.570 kb on + strand, within Dsui_2047at 2167.736 kb on + strand, within Dsui_2047at 2167.859 kb on + strandat 2167.861 kb on + strand, within Dsui_2047at 2167.882 kb on - strandat 2167.970 kb on - strandat 2168.079 kb on + strand, within Dsui_2047at 2168.079 kb on + strandat 2168.125 kb on - strandat 2168.190 kb on - strandat 2168.199 kb on - strand, within Dsui_2047at 2168.211 kb on - strandat 2168.302 kb on + strandat 2168.396 kb on + strandat 2168.667 kb on + strand, within Dsui_2048at 2168.672 kb on + strand, within Dsui_2048at 2168.741 kb on - strand, within Dsui_2048at 2168.763 kb on + strand, within Dsui_2048at 2168.771 kb on - strand, within Dsui_2048at 2168.990 kb on - strand, within Dsui_2048at 2168.996 kb on + strand, within Dsui_2048at 2169.047 kb on + strand, within Dsui_2048at 2169.057 kb on + strand, within Dsui_2048at 2169.067 kb on + strand, within Dsui_2048at 2169.070 kb on - strand, within Dsui_2048at 2169.215 kb on + strand, within Dsui_2048at 2169.226 kb on + strandat 2169.273 kb on - strand, within Dsui_2048at 2169.302 kb on + strand, within Dsui_2048at 2169.302 kb on + strand, within Dsui_2048at 2169.352 kb on - strand, within Dsui_2048at 2169.364 kb on + strand, within Dsui_2048at 2169.370 kb on - strand, within Dsui_2048at 2169.372 kb on - strand, within Dsui_2048at 2169.439 kb on - strand, within Dsui_2048at 2169.476 kb on + strand, within Dsui_2048at 2169.592 kb on - strand, within Dsui_2048at 2169.816 kb on - strand, within Dsui_2048at 2170.001 kb on + strandat 2170.131 kb on + strandat 2170.339 kb on - strandat 2170.375 kb on - strandat 2170.397 kb on - strandat 2170.453 kb on + strand, within Dsui_2049at 2170.483 kb on - strandat 2170.616 kb on + strandat 2170.617 kb on + strand, within Dsui_2049at 2170.617 kb on + strand, within Dsui_2049at 2170.666 kb on - strand, within Dsui_2049at 2170.685 kb on - strand, within Dsui_2049at 2170.863 kb on + strand, within Dsui_2049at 2170.996 kb on + strandat 2171.004 kb on - strand, within Dsui_2049at 2171.128 kb on - strand, within Dsui_2049at 2171.130 kb on + strand, within Dsui_2049at 2171.130 kb on + strand, within Dsui_2049at 2171.138 kb on - strand, within Dsui_2049at 2171.138 kb on - strand, within Dsui_2049at 2171.138 kb on - strand, within Dsui_2049

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,167,471 + Dsui_2047 0.33 +1.1
2,167,471 + +0.1
2,167,479 - -0.9
2,167,570 + Dsui_2047 0.40 +1.1
2,167,736 + Dsui_2047 0.52 +1.1
2,167,859 + +0.1
2,167,861 + Dsui_2047 0.61 -0.9
2,167,882 - +0.1
2,167,970 - +1.1
2,168,079 + Dsui_2047 0.77 +0.1
2,168,079 + +1.1
2,168,125 - +0.1
2,168,190 - +1.1
2,168,199 - Dsui_2047 0.85 -1.5
2,168,211 - +1.1
2,168,302 + +0.1
2,168,396 + +1.1
2,168,667 + Dsui_2048 0.12 -0.5
2,168,672 + Dsui_2048 0.12 -1.5
2,168,741 - Dsui_2048 0.16 +0.0
2,168,763 + Dsui_2048 0.18 +0.1
2,168,771 - Dsui_2048 0.18 -0.0
2,168,990 - Dsui_2048 0.31 +0.7
2,168,996 + Dsui_2048 0.32 +1.1
2,169,047 + Dsui_2048 0.35 +0.1
2,169,057 + Dsui_2048 0.35 +1.1
2,169,067 + Dsui_2048 0.36 +1.1
2,169,070 - Dsui_2048 0.36 +1.1
2,169,215 + Dsui_2048 0.45 -0.5
2,169,226 + +1.1
2,169,273 - Dsui_2048 0.48 -0.1
2,169,302 + Dsui_2048 0.50 -1.7
2,169,302 + Dsui_2048 0.50 +1.1
2,169,352 - Dsui_2048 0.53 +0.8
2,169,364 + Dsui_2048 0.53 +1.1
2,169,370 - Dsui_2048 0.54 -0.1
2,169,372 - Dsui_2048 0.54 +0.2
2,169,439 - Dsui_2048 0.58 +0.7
2,169,476 + Dsui_2048 0.60 +1.1
2,169,592 - Dsui_2048 0.67 -0.0
2,169,816 - Dsui_2048 0.80 -0.1
2,170,001 + +0.1
2,170,131 + -0.5
2,170,339 - +1.1
2,170,375 - +1.1
2,170,397 - +1.1
2,170,453 + Dsui_2049 0.12 +0.1
2,170,483 - +1.1
2,170,616 + +1.1
2,170,617 + Dsui_2049 0.22 -0.5
2,170,617 + Dsui_2049 0.22 +0.1
2,170,666 - Dsui_2049 0.25 -0.5
2,170,685 - Dsui_2049 0.26 -1.5
2,170,863 + Dsui_2049 0.37 +0.1
2,170,996 + +1.1
2,171,004 - Dsui_2049 0.45 +0.4
2,171,128 - Dsui_2049 0.52 -1.3
2,171,130 + Dsui_2049 0.52 -0.9
2,171,130 + Dsui_2049 0.52 -1.5
2,171,138 - Dsui_2049 0.53 -0.9
2,171,138 - Dsui_2049 0.53 +1.1
2,171,138 - Dsui_2049 0.53 -0.5

Or see this region's nucleotide sequence