Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1936 and Dsui_1937 are separated by 69 nucleotides Dsui_1937 and Dsui_1938 are separated by 266 nucleotides
Dsui_1936: Dsui_1936 - cytosine deaminase-like metal-dependent hydrolase, at 2,045,130 to 2,046,464
_1936
Dsui_1937: Dsui_1937 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 2,046,534 to 2,047,175
_1937
Dsui_1938: Dsui_1938 - DNA gyrase, A subunit, at 2,047,442 to 2,050,063
_1938
Position (kb)
2046
2047
2048 Strain fitness (log2 ratio)
-1
0
1 at 2045.576 kb on + strand at 2045.614 kb on - strand, within Dsui_1936 at 2045.616 kb on - strand, within Dsui_1936 at 2045.626 kb on - strand, within Dsui_1936 at 2045.634 kb on - strand, within Dsui_1936 at 2045.701 kb on - strand, within Dsui_1936 at 2045.708 kb on + strand, within Dsui_1936 at 2045.798 kb on - strand, within Dsui_1936 at 2045.852 kb on - strand, within Dsui_1936 at 2045.882 kb on + strand, within Dsui_1936 at 2045.889 kb on + strand, within Dsui_1936 at 2045.890 kb on - strand, within Dsui_1936 at 2045.923 kb on - strand, within Dsui_1936 at 2045.994 kb on + strand at 2046.002 kb on - strand, within Dsui_1936 at 2046.002 kb on - strand, within Dsui_1936 at 2046.170 kb on + strand at 2046.170 kb on - strand, within Dsui_1936 at 2046.219 kb on + strand at 2046.219 kb on + strand at 2046.219 kb on + strand at 2046.219 kb on + strand, within Dsui_1936 at 2046.219 kb on + strand, within Dsui_1936 at 2046.227 kb on - strand, within Dsui_1936 at 2046.227 kb on - strand, within Dsui_1936 at 2046.229 kb on + strand at 2046.251 kb on + strand at 2046.382 kb on + strand at 2046.383 kb on + strand at 2046.391 kb on + strand at 2046.401 kb on + strand at 2046.467 kb on + strand at 2046.467 kb on + strand at 2046.467 kb on + strand at 2046.482 kb on - strand at 2046.528 kb on - strand at 2046.555 kb on - strand at 2046.586 kb on - strand at 2046.586 kb on - strand at 2046.644 kb on - strand, within Dsui_1937 at 2046.705 kb on + strand, within Dsui_1937 at 2046.705 kb on + strand, within Dsui_1937 at 2046.713 kb on - strand, within Dsui_1937 at 2046.713 kb on - strand, within Dsui_1937 at 2046.713 kb on - strand, within Dsui_1937 at 2046.713 kb on - strand, within Dsui_1937 at 2046.737 kb on + strand, within Dsui_1937 at 2046.745 kb on - strand, within Dsui_1937 at 2046.752 kb on + strand, within Dsui_1937 at 2046.791 kb on - strand, within Dsui_1937 at 2046.837 kb on + strand, within Dsui_1937 at 2046.856 kb on + strand, within Dsui_1937 at 2046.900 kb on + strand, within Dsui_1937 at 2046.970 kb on + strand, within Dsui_1937 at 2046.970 kb on + strand, within Dsui_1937 at 2046.978 kb on - strand, within Dsui_1937 at 2046.978 kb on - strand, within Dsui_1937 at 2046.978 kb on - strand, within Dsui_1937 at 2046.978 kb on - strand, within Dsui_1937 at 2047.030 kb on + strand, within Dsui_1937 at 2047.040 kb on + strand at 2047.040 kb on + strand, within Dsui_1937 at 2047.040 kb on + strand, within Dsui_1937 at 2047.048 kb on - strand, within Dsui_1937 at 2047.051 kb on + strand, within Dsui_1937 at 2047.072 kb on - strand, within Dsui_1937 at 2047.107 kb on - strand, within Dsui_1937 at 2047.112 kb on - strand at 2047.161 kb on + strand at 2047.195 kb on - strand at 2047.198 kb on - strand at 2047.214 kb on - strand at 2047.214 kb on - strand at 2047.219 kb on - strand at 2047.245 kb on - strand at 2047.249 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,045,576 + +1.1 2,045,614 - Dsui_1936 0.36 +1.1 2,045,616 - Dsui_1936 0.36 +0.1 2,045,626 - Dsui_1936 0.37 -0.9 2,045,634 - Dsui_1936 0.38 +0.1 2,045,701 - Dsui_1936 0.43 +0.1 2,045,708 + Dsui_1936 0.43 +1.1 2,045,798 - Dsui_1936 0.50 +1.1 2,045,852 - Dsui_1936 0.54 +1.1 2,045,882 + Dsui_1936 0.56 -0.1 2,045,889 + Dsui_1936 0.57 -1.2 2,045,890 - Dsui_1936 0.57 -1.4 2,045,923 - Dsui_1936 0.59 +1.1 2,045,994 + +1.1 2,046,002 - Dsui_1936 0.65 -1.4 2,046,002 - Dsui_1936 0.65 +1.1 2,046,170 + +0.1 2,046,170 - Dsui_1936 0.78 +1.1 2,046,219 + +1.1 2,046,219 + +0.1 2,046,219 + -0.4 2,046,219 + Dsui_1936 0.82 -1.2 2,046,219 + Dsui_1936 0.82 -0.4 2,046,227 - Dsui_1936 0.82 +0.1 2,046,227 - Dsui_1936 0.82 -0.9 2,046,229 + -0.4 2,046,251 + +1.1 2,046,382 + +1.1 2,046,383 + -0.9 2,046,391 + +0.1 2,046,401 + -0.4 2,046,467 + +0.1 2,046,467 + +1.1 2,046,467 + +1.1 2,046,482 - +1.1 2,046,528 - +0.1 2,046,555 - +0.2 2,046,586 - -1.3 2,046,586 - +0.6 2,046,644 - Dsui_1937 0.17 +0.3 2,046,705 + Dsui_1937 0.27 -0.9 2,046,705 + Dsui_1937 0.27 +1.1 2,046,713 - Dsui_1937 0.28 +0.6 2,046,713 - Dsui_1937 0.28 +0.2 2,046,713 - Dsui_1937 0.28 +0.5 2,046,713 - Dsui_1937 0.28 +1.0 2,046,737 + Dsui_1937 0.32 -0.4 2,046,745 - Dsui_1937 0.33 +0.3 2,046,752 + Dsui_1937 0.34 -0.4 2,046,791 - Dsui_1937 0.40 +0.8 2,046,837 + Dsui_1937 0.47 +0.1 2,046,856 + Dsui_1937 0.50 +0.1 2,046,900 + Dsui_1937 0.57 -0.4 2,046,970 + Dsui_1937 0.68 -1.7 2,046,970 + Dsui_1937 0.68 +0.1 2,046,978 - Dsui_1937 0.69 -0.1 2,046,978 - Dsui_1937 0.69 +0.0 2,046,978 - Dsui_1937 0.69 +0.8 2,046,978 - Dsui_1937 0.69 +0.3 2,047,030 + Dsui_1937 0.77 +0.1 2,047,040 + +0.1 2,047,040 + Dsui_1937 0.79 +1.1 2,047,040 + Dsui_1937 0.79 -1.2 2,047,048 - Dsui_1937 0.80 +0.4 2,047,051 + Dsui_1937 0.81 +0.1 2,047,072 - Dsui_1937 0.84 +0.3 2,047,107 - Dsui_1937 0.89 +0.4 2,047,112 - +1.1 2,047,161 + +0.1 2,047,195 - -0.5 2,047,198 - +0.2 2,047,214 - +0.1 2,047,214 - +1.7 2,047,219 - -0.4 2,047,245 - -0.4 2,047,249 + +1.1
Or see this region's nucleotide sequence