Strain Fitness in Dechlorosoma suillum PS around Dsui_1937

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1936 and Dsui_1937 are separated by 69 nucleotidesDsui_1937 and Dsui_1938 are separated by 266 nucleotides Dsui_1936: Dsui_1936 - cytosine deaminase-like metal-dependent hydrolase, at 2,045,130 to 2,046,464 _1936 Dsui_1937: Dsui_1937 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 2,046,534 to 2,047,175 _1937 Dsui_1938: Dsui_1938 - DNA gyrase, A subunit, at 2,047,442 to 2,050,063 _1938 Position (kb) 2046 2047 2048Strain fitness (log2 ratio) -1 0 1at 2045.576 kb on + strandat 2045.614 kb on - strand, within Dsui_1936at 2045.616 kb on - strand, within Dsui_1936at 2045.626 kb on - strand, within Dsui_1936at 2045.634 kb on - strand, within Dsui_1936at 2045.701 kb on - strand, within Dsui_1936at 2045.708 kb on + strand, within Dsui_1936at 2045.798 kb on - strand, within Dsui_1936at 2045.852 kb on - strand, within Dsui_1936at 2045.882 kb on + strand, within Dsui_1936at 2045.889 kb on + strand, within Dsui_1936at 2045.890 kb on - strand, within Dsui_1936at 2045.923 kb on - strand, within Dsui_1936at 2045.994 kb on + strandat 2046.002 kb on - strand, within Dsui_1936at 2046.002 kb on - strand, within Dsui_1936at 2046.170 kb on + strandat 2046.170 kb on - strand, within Dsui_1936at 2046.219 kb on + strandat 2046.219 kb on + strandat 2046.219 kb on + strandat 2046.219 kb on + strand, within Dsui_1936at 2046.219 kb on + strand, within Dsui_1936at 2046.227 kb on - strand, within Dsui_1936at 2046.227 kb on - strand, within Dsui_1936at 2046.229 kb on + strandat 2046.251 kb on + strandat 2046.382 kb on + strandat 2046.383 kb on + strandat 2046.391 kb on + strandat 2046.401 kb on + strandat 2046.467 kb on + strandat 2046.467 kb on + strandat 2046.467 kb on + strandat 2046.482 kb on - strandat 2046.528 kb on - strandat 2046.555 kb on - strandat 2046.586 kb on - strandat 2046.586 kb on - strandat 2046.644 kb on - strand, within Dsui_1937at 2046.705 kb on + strand, within Dsui_1937at 2046.705 kb on + strand, within Dsui_1937at 2046.713 kb on - strand, within Dsui_1937at 2046.713 kb on - strand, within Dsui_1937at 2046.713 kb on - strand, within Dsui_1937at 2046.713 kb on - strand, within Dsui_1937at 2046.737 kb on + strand, within Dsui_1937at 2046.745 kb on - strand, within Dsui_1937at 2046.752 kb on + strand, within Dsui_1937at 2046.791 kb on - strand, within Dsui_1937at 2046.837 kb on + strand, within Dsui_1937at 2046.856 kb on + strand, within Dsui_1937at 2046.900 kb on + strand, within Dsui_1937at 2046.970 kb on + strand, within Dsui_1937at 2046.970 kb on + strand, within Dsui_1937at 2046.978 kb on - strand, within Dsui_1937at 2046.978 kb on - strand, within Dsui_1937at 2046.978 kb on - strand, within Dsui_1937at 2046.978 kb on - strand, within Dsui_1937at 2047.030 kb on + strand, within Dsui_1937at 2047.040 kb on + strandat 2047.040 kb on + strand, within Dsui_1937at 2047.040 kb on + strand, within Dsui_1937at 2047.048 kb on - strand, within Dsui_1937at 2047.051 kb on + strand, within Dsui_1937at 2047.072 kb on - strand, within Dsui_1937at 2047.107 kb on - strand, within Dsui_1937at 2047.112 kb on - strandat 2047.161 kb on + strandat 2047.195 kb on - strandat 2047.198 kb on - strandat 2047.214 kb on - strandat 2047.214 kb on - strandat 2047.219 kb on - strandat 2047.245 kb on - strandat 2047.249 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,045,576 + +1.1
2,045,614 - Dsui_1936 0.36 +1.1
2,045,616 - Dsui_1936 0.36 +0.1
2,045,626 - Dsui_1936 0.37 -0.9
2,045,634 - Dsui_1936 0.38 +0.1
2,045,701 - Dsui_1936 0.43 +0.1
2,045,708 + Dsui_1936 0.43 +1.1
2,045,798 - Dsui_1936 0.50 +1.1
2,045,852 - Dsui_1936 0.54 +1.1
2,045,882 + Dsui_1936 0.56 -0.1
2,045,889 + Dsui_1936 0.57 -1.2
2,045,890 - Dsui_1936 0.57 -1.4
2,045,923 - Dsui_1936 0.59 +1.1
2,045,994 + +1.1
2,046,002 - Dsui_1936 0.65 -1.4
2,046,002 - Dsui_1936 0.65 +1.1
2,046,170 + +0.1
2,046,170 - Dsui_1936 0.78 +1.1
2,046,219 + +1.1
2,046,219 + +0.1
2,046,219 + -0.4
2,046,219 + Dsui_1936 0.82 -1.2
2,046,219 + Dsui_1936 0.82 -0.4
2,046,227 - Dsui_1936 0.82 +0.1
2,046,227 - Dsui_1936 0.82 -0.9
2,046,229 + -0.4
2,046,251 + +1.1
2,046,382 + +1.1
2,046,383 + -0.9
2,046,391 + +0.1
2,046,401 + -0.4
2,046,467 + +0.1
2,046,467 + +1.1
2,046,467 + +1.1
2,046,482 - +1.1
2,046,528 - +0.1
2,046,555 - +0.2
2,046,586 - -1.3
2,046,586 - +0.6
2,046,644 - Dsui_1937 0.17 +0.3
2,046,705 + Dsui_1937 0.27 -0.9
2,046,705 + Dsui_1937 0.27 +1.1
2,046,713 - Dsui_1937 0.28 +0.6
2,046,713 - Dsui_1937 0.28 +0.2
2,046,713 - Dsui_1937 0.28 +0.5
2,046,713 - Dsui_1937 0.28 +1.0
2,046,737 + Dsui_1937 0.32 -0.4
2,046,745 - Dsui_1937 0.33 +0.3
2,046,752 + Dsui_1937 0.34 -0.4
2,046,791 - Dsui_1937 0.40 +0.8
2,046,837 + Dsui_1937 0.47 +0.1
2,046,856 + Dsui_1937 0.50 +0.1
2,046,900 + Dsui_1937 0.57 -0.4
2,046,970 + Dsui_1937 0.68 -1.7
2,046,970 + Dsui_1937 0.68 +0.1
2,046,978 - Dsui_1937 0.69 -0.1
2,046,978 - Dsui_1937 0.69 +0.0
2,046,978 - Dsui_1937 0.69 +0.8
2,046,978 - Dsui_1937 0.69 +0.3
2,047,030 + Dsui_1937 0.77 +0.1
2,047,040 + +0.1
2,047,040 + Dsui_1937 0.79 +1.1
2,047,040 + Dsui_1937 0.79 -1.2
2,047,048 - Dsui_1937 0.80 +0.4
2,047,051 + Dsui_1937 0.81 +0.1
2,047,072 - Dsui_1937 0.84 +0.3
2,047,107 - Dsui_1937 0.89 +0.4
2,047,112 - +1.1
2,047,161 + +0.1
2,047,195 - -0.5
2,047,198 - +0.2
2,047,214 - +0.1
2,047,214 - +1.7
2,047,219 - -0.4
2,047,245 - -0.4
2,047,249 + +1.1

Or see this region's nucleotide sequence