Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1860 and Dsui_1861 are separated by 331 nucleotides Dsui_1861 and Dsui_1862 are separated by 15 nucleotides Dsui_1862 and Dsui_1863 are separated by 191 nucleotides
Dsui_1860: Dsui_1860 - methyl-accepting chemotaxis protein, at 1,953,526 to 1,955,175
_1860
Dsui_1861: Dsui_1861 - HPt domain-containing protein, at 1,955,507 to 1,955,905
_1861
Dsui_1862: Dsui_1862 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,955,921 to 1,956,574
_1862
Dsui_1863: Dsui_1863 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,956,766 to 1,957,806
_1863
Position (kb)
1955
1956
1957 Strain fitness (log2 ratio)
-1
0
1 at 1955.022 kb on - strand at 1955.067 kb on + strand at 1955.075 kb on - strand at 1955.136 kb on + strand at 1955.167 kb on + strand at 1955.207 kb on - strand at 1955.288 kb on + strand at 1955.384 kb on - strand at 1955.580 kb on - strand, within Dsui_1861 at 1955.636 kb on - strand, within Dsui_1861 at 1955.659 kb on - strand, within Dsui_1861 at 1955.899 kb on + strand at 1955.985 kb on - strand at 1956.212 kb on - strand, within Dsui_1862 at 1956.282 kb on + strand, within Dsui_1862 at 1956.314 kb on - strand, within Dsui_1862 at 1956.387 kb on - strand, within Dsui_1862 at 1956.497 kb on - strand, within Dsui_1862 at 1956.497 kb on - strand, within Dsui_1862 at 1956.695 kb on - strand at 1956.806 kb on + strand at 1956.819 kb on - strand at 1956.880 kb on + strand, within Dsui_1863 at 1956.958 kb on - strand at 1957.026 kb on + strand, within Dsui_1863 at 1957.057 kb on - strand at 1957.280 kb on + strand, within Dsui_1863 at 1957.280 kb on + strand, within Dsui_1863 at 1957.424 kb on - strand at 1957.424 kb on - strand at 1957.476 kb on + strand, within Dsui_1863
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,955,022 - +0.9 1,955,067 + -0.7 1,955,075 - -0.7 1,955,136 + +0.9 1,955,167 + -0.1 1,955,207 - +0.9 1,955,288 + -0.7 1,955,384 - -0.1 1,955,580 - Dsui_1861 0.18 -1.1 1,955,636 - Dsui_1861 0.32 +0.9 1,955,659 - Dsui_1861 0.38 -0.1 1,955,899 + -1.1 1,955,985 - -0.1 1,956,212 - Dsui_1862 0.44 +0.2 1,956,282 + Dsui_1862 0.55 -0.7 1,956,314 - Dsui_1862 0.60 +1.5 1,956,387 - Dsui_1862 0.71 +0.2 1,956,497 - Dsui_1862 0.88 +0.5 1,956,497 - Dsui_1862 0.88 -0.0 1,956,695 - +0.9 1,956,806 + -1.7 1,956,819 - -0.1 1,956,880 + Dsui_1863 0.11 +0.2 1,956,958 - +0.9 1,957,026 + Dsui_1863 0.25 -0.1 1,957,057 - -0.7 1,957,280 + Dsui_1863 0.49 +0.9 1,957,280 + Dsui_1863 0.49 -0.1 1,957,424 - +0.9 1,957,424 - +0.9 1,957,476 + Dsui_1863 0.68 -0.7
Or see this region's nucleotide sequence