Strain Fitness in Dechlorosoma suillum PS around Dsui_1858

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1857 and Dsui_1858 are separated by 154 nucleotidesDsui_1858 and Dsui_1859 are separated by 18 nucleotidesDsui_1859 and Dsui_1860 are separated by 13 nucleotides Dsui_1857: Dsui_1857 - putative permease, DMT superfamily, at 1,951,202 to 1,952,101 _1857 Dsui_1858: Dsui_1858 - transcriptional regulator, at 1,952,256 to 1,953,140 _1858 Dsui_1859: Dsui_1859 - hypothetical protein, at 1,953,159 to 1,953,512 _1859 Dsui_1860: Dsui_1860 - methyl-accepting chemotaxis protein, at 1,953,526 to 1,955,175 _1860 Position (kb) 1952 1953 1954Strain fitness (log2 ratio) -3 -2 -1 0 1at 1951.368 kb on - strand, within Dsui_1857at 1951.376 kb on - strandat 1951.385 kb on + strandat 1951.440 kb on - strandat 1951.536 kb on + strandat 1951.544 kb on - strand, within Dsui_1857at 1951.572 kb on - strand, within Dsui_1857at 1951.611 kb on + strand, within Dsui_1857at 1951.845 kb on + strandat 1951.896 kb on - strandat 1952.017 kb on + strandat 1952.268 kb on + strandat 1952.342 kb on + strandat 1952.342 kb on + strandat 1952.729 kb on + strand, within Dsui_1858at 1952.737 kb on - strandat 1952.784 kb on + strand, within Dsui_1858at 1952.792 kb on - strand, within Dsui_1858at 1952.825 kb on + strand, within Dsui_1858at 1952.938 kb on + strand, within Dsui_1858at 1952.938 kb on + strand, within Dsui_1858at 1953.048 kb on - strand, within Dsui_1858at 1953.344 kb on + strand, within Dsui_1859at 1953.344 kb on + strand, within Dsui_1859at 1953.344 kb on + strandat 1953.344 kb on + strand, within Dsui_1859at 1953.344 kb on + strand, within Dsui_1859at 1953.344 kb on + strand, within Dsui_1859at 1953.352 kb on - strand, within Dsui_1859at 1953.352 kb on - strandat 1953.352 kb on - strandat 1953.352 kb on - strandat 1953.357 kb on - strandat 1953.381 kb on - strand, within Dsui_1859at 1953.436 kb on + strand, within Dsui_1859at 1953.452 kb on - strand, within Dsui_1859at 1953.507 kb on + strandat 1953.530 kb on + strandat 1953.538 kb on + strandat 1953.573 kb on + strandat 1953.573 kb on + strandat 1953.737 kb on - strand, within Dsui_1860at 1953.737 kb on - strand, within Dsui_1860at 1953.815 kb on + strand, within Dsui_1860at 1953.849 kb on + strandat 1953.849 kb on + strand, within Dsui_1860at 1953.849 kb on + strand, within Dsui_1860

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,951,368 - Dsui_1857 0.18 -2.8
1,951,376 - -0.7
1,951,385 + -0.1
1,951,440 - +0.9
1,951,536 + -0.7
1,951,544 - Dsui_1857 0.38 +0.9
1,951,572 - Dsui_1857 0.41 -1.4
1,951,611 + Dsui_1857 0.45 -0.7
1,951,845 + -0.1
1,951,896 - -0.1
1,952,017 + -0.1
1,952,268 + +0.2
1,952,342 + -0.1
1,952,342 + +0.2
1,952,729 + Dsui_1858 0.53 -0.1
1,952,737 - -0.1
1,952,784 + Dsui_1858 0.60 +0.2
1,952,792 - Dsui_1858 0.61 -0.1
1,952,825 + Dsui_1858 0.64 +0.5
1,952,938 + Dsui_1858 0.77 +0.1
1,952,938 + Dsui_1858 0.77 +0.4
1,953,048 - Dsui_1858 0.89 -0.1
1,953,344 + Dsui_1859 0.52 -1.1
1,953,344 + Dsui_1859 0.52 -0.1
1,953,344 + -0.1
1,953,344 + Dsui_1859 0.52 +0.9
1,953,344 + Dsui_1859 0.52 -1.4
1,953,344 + Dsui_1859 0.52 +0.9
1,953,352 - Dsui_1859 0.55 -2.7
1,953,352 - +0.9
1,953,352 - -1.1
1,953,352 - +0.9
1,953,357 - +0.9
1,953,381 - Dsui_1859 0.63 -0.1
1,953,436 + Dsui_1859 0.78 -0.1
1,953,452 - Dsui_1859 0.83 -0.1
1,953,507 + +0.9
1,953,530 + +0.9
1,953,538 + -1.4
1,953,573 + +0.9
1,953,573 + -1.7
1,953,737 - Dsui_1860 0.13 -0.7
1,953,737 - Dsui_1860 0.13 +0.9
1,953,815 + Dsui_1860 0.18 +0.9
1,953,849 + +0.9
1,953,849 + Dsui_1860 0.20 +0.9
1,953,849 + Dsui_1860 0.20 +0.9

Or see this region's nucleotide sequence