Strain Fitness in Dechlorosoma suillum PS around Dsui_1844

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1843 and Dsui_1844 are separated by 61 nucleotidesDsui_1844 and Dsui_1845 are separated by 11 nucleotides Dsui_1843: Dsui_1843 - hypothetical protein, at 1,939,174 to 1,939,590 _1843 Dsui_1844: Dsui_1844 - phosphate transport regulator related to PhoU, at 1,939,652 to 1,940,305 _1844 Dsui_1845: Dsui_1845 - phosphate/sulfate permease, at 1,940,317 to 1,941,360 _1845 Position (kb) 1939 1940 1941Strain fitness (log2 ratio) -2 -1 0 1 2at 1938.762 kb on + strandat 1938.825 kb on + strandat 1938.827 kb on - strandat 1938.893 kb on + strandat 1938.917 kb on + strandat 1938.917 kb on + strandat 1938.934 kb on + strandat 1938.934 kb on + strandat 1938.942 kb on - strandat 1938.942 kb on - strandat 1938.942 kb on - strandat 1938.995 kb on + strandat 1938.995 kb on + strandat 1939.003 kb on - strandat 1939.217 kb on + strand, within Dsui_1843at 1939.222 kb on + strand, within Dsui_1843at 1939.222 kb on + strand, within Dsui_1843at 1939.222 kb on + strand, within Dsui_1843at 1939.222 kb on + strand, within Dsui_1843at 1939.229 kb on + strand, within Dsui_1843at 1939.230 kb on - strand, within Dsui_1843at 1939.230 kb on - strand, within Dsui_1843at 1939.230 kb on - strand, within Dsui_1843at 1939.311 kb on - strand, within Dsui_1843at 1939.330 kb on + strand, within Dsui_1843at 1939.330 kb on + strand, within Dsui_1843at 1939.525 kb on + strand, within Dsui_1843at 1939.625 kb on - strandat 1939.639 kb on + strandat 1939.731 kb on - strand, within Dsui_1844at 1939.770 kb on + strand, within Dsui_1844at 1939.778 kb on - strandat 1939.817 kb on + strand, within Dsui_1844at 1939.997 kb on + strand, within Dsui_1844at 1940.005 kb on - strand, within Dsui_1844at 1940.034 kb on + strand, within Dsui_1844at 1940.068 kb on + strandat 1940.068 kb on + strand, within Dsui_1844at 1940.076 kb on - strand, within Dsui_1844at 1940.315 kb on + strandat 1940.348 kb on + strandat 1940.353 kb on + strandat 1940.378 kb on - strandat 1940.394 kb on + strandat 1940.485 kb on - strand, within Dsui_1845at 1940.664 kb on - strandat 1940.718 kb on + strandat 1940.718 kb on + strandat 1940.897 kb on - strand, within Dsui_1845at 1940.962 kb on + strand, within Dsui_1845at 1941.061 kb on + strandat 1941.069 kb on - strand, within Dsui_1845at 1941.096 kb on - strand, within Dsui_1845at 1941.189 kb on - strand, within Dsui_1845

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,938,762 + -1.2
1,938,825 + -1.7
1,938,827 - +0.8
1,938,893 + +0.3
1,938,917 + -0.6
1,938,917 + -1.1
1,938,934 + -0.9
1,938,934 + +0.8
1,938,942 - -0.6
1,938,942 - +0.6
1,938,942 - -1.5
1,938,995 + +0.6
1,938,995 + +0.9
1,939,003 - +0.1
1,939,217 + Dsui_1843 0.10 -2.5
1,939,222 + Dsui_1843 0.12 -1.2
1,939,222 + Dsui_1843 0.12 +0.3
1,939,222 + Dsui_1843 0.12 -1.8
1,939,222 + Dsui_1843 0.12 -1.5
1,939,229 + Dsui_1843 0.13 +0.3
1,939,230 - Dsui_1843 0.13 -1.2
1,939,230 - Dsui_1843 0.13 +0.8
1,939,230 - Dsui_1843 0.13 -0.2
1,939,311 - Dsui_1843 0.33 +0.8
1,939,330 + Dsui_1843 0.37 +1.2
1,939,330 + Dsui_1843 0.37 -0.2
1,939,525 + Dsui_1843 0.84 +1.2
1,939,625 - -1.5
1,939,639 + +1.8
1,939,731 - Dsui_1844 0.12 -0.1
1,939,770 + Dsui_1844 0.18 +0.9
1,939,778 - +0.9
1,939,817 + Dsui_1844 0.25 +0.9
1,939,997 + Dsui_1844 0.53 +0.9
1,940,005 - Dsui_1844 0.54 -1.5
1,940,034 + Dsui_1844 0.58 +0.9
1,940,068 + -0.1
1,940,068 + Dsui_1844 0.64 +0.9
1,940,076 - Dsui_1844 0.65 -0.1
1,940,315 + -1.9
1,940,348 + -1.1
1,940,353 + -0.7
1,940,378 - +0.9
1,940,394 + -0.7
1,940,485 - Dsui_1845 0.16 -0.1
1,940,664 - +0.9
1,940,718 + +0.9
1,940,718 + +0.9
1,940,897 - Dsui_1845 0.56 -1.5
1,940,962 + Dsui_1845 0.62 -0.1
1,941,061 + +0.9
1,941,069 - Dsui_1845 0.72 +0.9
1,941,096 - Dsui_1845 0.75 +0.9
1,941,189 - Dsui_1845 0.84 -1.7

Or see this region's nucleotide sequence