Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1818 and Dsui_1819 are separated by 71 nucleotides Dsui_1819 and Dsui_1820 are separated by 268 nucleotides Dsui_1820 and Dsui_1821 are separated by 93 nucleotides
Dsui_1818: Dsui_1818 - anthranilate phosphoribosyltransferase, at 1,916,575 to 1,917,558
_1818
Dsui_1819: Dsui_1819 - 4-oxalocrotonate tautomerase family enzyme, at 1,917,630 to 1,917,830
_1819
Dsui_1820: Dsui_1820 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,918,099 to 1,919,232
_1820
Dsui_1821: Dsui_1821 - esterase/lipase, at 1,919,326 to 1,920,243
_1821
Position (kb)
1918
1919
1920 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1917.152 kb on - strand at 1917.152 kb on - strand, within Dsui_1818 at 1917.191 kb on + strand, within Dsui_1818 at 1917.199 kb on - strand at 1917.386 kb on + strand, within Dsui_1818 at 1917.398 kb on + strand, within Dsui_1818 at 1917.418 kb on + strand, within Dsui_1818 at 1917.418 kb on + strand at 1917.510 kb on + strand at 1917.518 kb on - strand at 1917.518 kb on - strand at 1917.536 kb on + strand at 1917.561 kb on - strand at 1917.617 kb on - strand at 1917.644 kb on + strand at 1917.722 kb on - strand, within Dsui_1819 at 1917.807 kb on + strand, within Dsui_1819 at 1917.843 kb on + strand at 1917.846 kb on - strand at 1918.010 kb on + strand at 1918.055 kb on - strand at 1918.236 kb on + strand, within Dsui_1820 at 1918.245 kb on + strand at 1918.345 kb on + strand, within Dsui_1820 at 1918.435 kb on + strand at 1918.435 kb on + strand, within Dsui_1820 at 1918.593 kb on - strand at 1918.738 kb on + strand at 1918.746 kb on - strand at 1918.782 kb on - strand at 1918.795 kb on - strand, within Dsui_1820 at 1918.919 kb on + strand, within Dsui_1820 at 1918.926 kb on + strand at 1919.086 kb on - strand, within Dsui_1820 at 1919.093 kb on + strand, within Dsui_1820 at 1919.228 kb on + strand at 1919.229 kb on - strand at 1919.265 kb on + strand at 1919.265 kb on + strand at 1919.434 kb on - strand, within Dsui_1821 at 1919.564 kb on + strand at 1919.570 kb on - strand, within Dsui_1821 at 1919.655 kb on + strand, within Dsui_1821 at 1919.742 kb on + strand at 1920.053 kb on - strand at 1920.060 kb on + strand at 1920.060 kb on + strand at 1920.068 kb on - strand at 1920.078 kb on - strand, within Dsui_1821 at 1920.135 kb on - strand at 1920.141 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,917,152 - +0.8 1,917,152 - Dsui_1818 0.59 -0.8 1,917,191 + Dsui_1818 0.63 -3.2 1,917,199 - +0.8 1,917,386 + Dsui_1818 0.82 -0.9 1,917,398 + Dsui_1818 0.84 -0.5 1,917,418 + Dsui_1818 0.86 -1.2 1,917,418 + +0.8 1,917,510 + +0.2 1,917,518 - +0.8 1,917,518 - +0.8 1,917,536 + -1.8 1,917,561 - +1.8 1,917,617 - -2.2 1,917,644 + +0.8 1,917,722 - Dsui_1819 0.46 -2.8 1,917,807 + Dsui_1819 0.88 -2.2 1,917,843 + -0.2 1,917,846 - -0.2 1,918,010 + -2.1 1,918,055 - -1.2 1,918,236 + Dsui_1820 0.12 -0.2 1,918,245 + +0.8 1,918,345 + Dsui_1820 0.22 -1.8 1,918,435 + +0.8 1,918,435 + Dsui_1820 0.30 -0.8 1,918,593 - +0.8 1,918,738 + -0.2 1,918,746 - +0.8 1,918,782 - +0.8 1,918,795 - Dsui_1820 0.61 +0.3 1,918,919 + Dsui_1820 0.72 +0.8 1,918,926 + +0.8 1,919,086 - Dsui_1820 0.87 -0.2 1,919,093 + Dsui_1820 0.88 -0.8 1,919,228 + -0.2 1,919,229 - +0.8 1,919,265 + -0.8 1,919,265 + +0.8 1,919,434 - Dsui_1821 0.12 -0.2 1,919,564 + -0.2 1,919,570 - Dsui_1821 0.27 +0.8 1,919,655 + Dsui_1821 0.36 -1.3 1,919,742 + +0.8 1,920,053 - +0.8 1,920,060 + +0.8 1,920,060 + +0.8 1,920,068 - +0.8 1,920,078 - Dsui_1821 0.82 -0.8 1,920,135 - +0.8 1,920,141 + +0.8
Or see this region's nucleotide sequence