Strain Fitness in Dechlorosoma suillum PS around Dsui_1820

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1818 and Dsui_1819 are separated by 71 nucleotidesDsui_1819 and Dsui_1820 are separated by 268 nucleotidesDsui_1820 and Dsui_1821 are separated by 93 nucleotides Dsui_1818: Dsui_1818 - anthranilate phosphoribosyltransferase, at 1,916,575 to 1,917,558 _1818 Dsui_1819: Dsui_1819 - 4-oxalocrotonate tautomerase family enzyme, at 1,917,630 to 1,917,830 _1819 Dsui_1820: Dsui_1820 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,918,099 to 1,919,232 _1820 Dsui_1821: Dsui_1821 - esterase/lipase, at 1,919,326 to 1,920,243 _1821 Position (kb) 1918 1919 1920Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1917.152 kb on - strandat 1917.152 kb on - strand, within Dsui_1818at 1917.191 kb on + strand, within Dsui_1818at 1917.199 kb on - strandat 1917.386 kb on + strand, within Dsui_1818at 1917.398 kb on + strand, within Dsui_1818at 1917.418 kb on + strand, within Dsui_1818at 1917.418 kb on + strandat 1917.510 kb on + strandat 1917.518 kb on - strandat 1917.518 kb on - strandat 1917.536 kb on + strandat 1917.561 kb on - strandat 1917.617 kb on - strandat 1917.644 kb on + strandat 1917.722 kb on - strand, within Dsui_1819at 1917.807 kb on + strand, within Dsui_1819at 1917.843 kb on + strandat 1917.846 kb on - strandat 1918.010 kb on + strandat 1918.055 kb on - strandat 1918.236 kb on + strand, within Dsui_1820at 1918.245 kb on + strandat 1918.345 kb on + strand, within Dsui_1820at 1918.435 kb on + strandat 1918.435 kb on + strand, within Dsui_1820at 1918.593 kb on - strandat 1918.738 kb on + strandat 1918.746 kb on - strandat 1918.782 kb on - strandat 1918.795 kb on - strand, within Dsui_1820at 1918.919 kb on + strand, within Dsui_1820at 1918.926 kb on + strandat 1919.086 kb on - strand, within Dsui_1820at 1919.093 kb on + strand, within Dsui_1820at 1919.228 kb on + strandat 1919.229 kb on - strandat 1919.265 kb on + strandat 1919.265 kb on + strandat 1919.434 kb on - strand, within Dsui_1821at 1919.564 kb on + strandat 1919.570 kb on - strand, within Dsui_1821at 1919.655 kb on + strand, within Dsui_1821at 1919.742 kb on + strandat 1920.053 kb on - strandat 1920.060 kb on + strandat 1920.060 kb on + strandat 1920.068 kb on - strandat 1920.078 kb on - strand, within Dsui_1821at 1920.135 kb on - strandat 1920.141 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,917,152 - +0.8
1,917,152 - Dsui_1818 0.59 -0.8
1,917,191 + Dsui_1818 0.63 -3.2
1,917,199 - +0.8
1,917,386 + Dsui_1818 0.82 -0.9
1,917,398 + Dsui_1818 0.84 -0.5
1,917,418 + Dsui_1818 0.86 -1.2
1,917,418 + +0.8
1,917,510 + +0.2
1,917,518 - +0.8
1,917,518 - +0.8
1,917,536 + -1.8
1,917,561 - +1.8
1,917,617 - -2.2
1,917,644 + +0.8
1,917,722 - Dsui_1819 0.46 -2.8
1,917,807 + Dsui_1819 0.88 -2.2
1,917,843 + -0.2
1,917,846 - -0.2
1,918,010 + -2.1
1,918,055 - -1.2
1,918,236 + Dsui_1820 0.12 -0.2
1,918,245 + +0.8
1,918,345 + Dsui_1820 0.22 -1.8
1,918,435 + +0.8
1,918,435 + Dsui_1820 0.30 -0.8
1,918,593 - +0.8
1,918,738 + -0.2
1,918,746 - +0.8
1,918,782 - +0.8
1,918,795 - Dsui_1820 0.61 +0.3
1,918,919 + Dsui_1820 0.72 +0.8
1,918,926 + +0.8
1,919,086 - Dsui_1820 0.87 -0.2
1,919,093 + Dsui_1820 0.88 -0.8
1,919,228 + -0.2
1,919,229 - +0.8
1,919,265 + -0.8
1,919,265 + +0.8
1,919,434 - Dsui_1821 0.12 -0.2
1,919,564 + -0.2
1,919,570 - Dsui_1821 0.27 +0.8
1,919,655 + Dsui_1821 0.36 -1.3
1,919,742 + +0.8
1,920,053 - +0.8
1,920,060 + +0.8
1,920,060 + +0.8
1,920,068 - +0.8
1,920,078 - Dsui_1821 0.82 -0.8
1,920,135 - +0.8
1,920,141 + +0.8

Or see this region's nucleotide sequence