Strain Fitness in Dechlorosoma suillum PS around Dsui_1452

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1450 and Dsui_1451 are separated by 22 nucleotidesDsui_1451 and Dsui_1452 are separated by 43 nucleotidesDsui_1452 and Dsui_1453 are separated by 13 nucleotidesDsui_1453 and Dsui_1454 are separated by 7 nucleotides Dsui_1450: Dsui_1450 - serine/threonine protein phosphatase, at 1,507,015 to 1,507,842 _1450 Dsui_1451: Dsui_1451 - FHA domain-containing protein, at 1,507,865 to 1,508,593 _1451 Dsui_1452: Dsui_1452 - putative transmembrane sensor domain protein, at 1,508,637 to 1,510,850 _1452 Dsui_1453: Dsui_1453 - metal-dependent hydrolase, beta-lactamase superfamily III, at 1,510,864 to 1,511,637 _1453 Dsui_1454: Dsui_1454 - Rhodanese-like protein,cyclic nucleotide-binding protein, at 1,511,645 to 1,512,727 _1454 Position (kb) 1508 1509 1510 1511Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1507.855 kb on + strandat 1507.863 kb on - strandat 1507.969 kb on - strand, within Dsui_1451at 1508.005 kb on + strand, within Dsui_1451at 1508.036 kb on + strand, within Dsui_1451at 1508.036 kb on + strand, within Dsui_1451at 1508.041 kb on + strand, within Dsui_1451at 1508.058 kb on - strandat 1508.410 kb on - strand, within Dsui_1451at 1508.587 kb on + strandat 1508.682 kb on - strandat 1508.689 kb on + strandat 1508.697 kb on - strandat 1509.164 kb on - strand, within Dsui_1452at 1509.493 kb on + strand, within Dsui_1452at 1509.706 kb on - strand, within Dsui_1452at 1509.758 kb on - strand, within Dsui_1452at 1509.837 kb on - strand, within Dsui_1452at 1509.853 kb on + strand, within Dsui_1452at 1509.860 kb on - strandat 1509.862 kb on - strand, within Dsui_1452at 1509.892 kb on - strandat 1510.062 kb on - strand, within Dsui_1452at 1510.077 kb on - strand, within Dsui_1452at 1510.197 kb on + strand, within Dsui_1452at 1510.215 kb on - strand, within Dsui_1452at 1510.232 kb on + strand, within Dsui_1452at 1510.251 kb on - strandat 1510.314 kb on + strand, within Dsui_1452at 1510.344 kb on + strand, within Dsui_1452at 1510.430 kb on + strand, within Dsui_1452at 1510.430 kb on + strandat 1510.487 kb on - strand, within Dsui_1452at 1510.566 kb on - strand, within Dsui_1452at 1510.580 kb on + strand, within Dsui_1452at 1510.619 kb on - strandat 1510.642 kb on - strandat 1510.642 kb on - strandat 1510.682 kb on - strandat 1510.922 kb on + strandat 1510.922 kb on + strandat 1510.930 kb on - strandat 1510.930 kb on - strandat 1510.930 kb on - strandat 1511.021 kb on + strand, within Dsui_1453at 1511.104 kb on + strand, within Dsui_1453at 1511.190 kb on - strandat 1511.237 kb on + strand, within Dsui_1453at 1511.237 kb on + strand, within Dsui_1453at 1511.281 kb on + strand, within Dsui_1453at 1511.380 kb on - strand, within Dsui_1453at 1511.442 kb on + strand, within Dsui_1453at 1511.474 kb on - strand, within Dsui_1453at 1511.535 kb on + strand, within Dsui_1453at 1511.630 kb on - strandat 1511.666 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,507,855 + -1.5
1,507,863 - +0.7
1,507,969 - Dsui_1451 0.14 -1.3
1,508,005 + Dsui_1451 0.19 -0.7
1,508,036 + Dsui_1451 0.23 -0.1
1,508,036 + Dsui_1451 0.23 -1.7
1,508,041 + Dsui_1451 0.24 +2.2
1,508,058 - -0.3
1,508,410 - Dsui_1451 0.75 -0.3
1,508,587 + -0.3
1,508,682 - -0.9
1,508,689 + -0.9
1,508,697 - -0.9
1,509,164 - Dsui_1452 0.24 +0.7
1,509,493 + Dsui_1452 0.39 -0.3
1,509,706 - Dsui_1452 0.48 +0.7
1,509,758 - Dsui_1452 0.51 -0.9
1,509,837 - Dsui_1452 0.54 -0.3
1,509,853 + Dsui_1452 0.55 -2.1
1,509,860 - -0.3
1,509,862 - Dsui_1452 0.55 +0.7
1,509,892 - -0.3
1,510,062 - Dsui_1452 0.64 -0.9
1,510,077 - Dsui_1452 0.65 +0.7
1,510,197 + Dsui_1452 0.70 +0.7
1,510,215 - Dsui_1452 0.71 +0.7
1,510,232 + Dsui_1452 0.72 +0.1
1,510,251 - +0.7
1,510,314 + Dsui_1452 0.76 +0.6
1,510,344 + Dsui_1452 0.77 +0.9
1,510,430 + Dsui_1452 0.81 +0.7
1,510,430 + +0.7
1,510,487 - Dsui_1452 0.84 -2.9
1,510,566 - Dsui_1452 0.87 +0.7
1,510,580 + Dsui_1452 0.88 +0.1
1,510,619 - +0.7
1,510,642 - -2.3
1,510,642 - -0.3
1,510,682 - +0.7
1,510,922 + -0.1
1,510,922 + +0.7
1,510,930 - -1.7
1,510,930 - +0.7
1,510,930 - +0.7
1,511,021 + Dsui_1453 0.20 +0.7
1,511,104 + Dsui_1453 0.31 +0.7
1,511,190 - +0.7
1,511,237 + Dsui_1453 0.48 -0.1
1,511,237 + Dsui_1453 0.48 +0.7
1,511,281 + Dsui_1453 0.54 -0.6
1,511,380 - Dsui_1453 0.67 -0.9
1,511,442 + Dsui_1453 0.75 +0.2
1,511,474 - Dsui_1453 0.79 -0.3
1,511,535 + Dsui_1453 0.87 -0.6
1,511,630 - +0.7
1,511,666 + -1.7

Or see this region's nucleotide sequence